Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 0.0e+00 1889.8 955 100.0
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 0.0e+00 1565.4 982 83.3
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 0.0e+00 1430.6 985 76.4
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 0.0e+00 1417.9 987 76.3
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 0.0e+00 1078.9 1027 58.8
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.2e-270 936.0 1033 53.3
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 2.7e-268 929.1 1017 52.9
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 2.0e-255 886.3 1021 52.7
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.7e-249 866.7 985 51.6
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.4e-242 842.4 1001 51.9
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.0e-222 777.7 987 49.0
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 4.4e-165 586.3 1072 38.5
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 4.4e-165 586.3 1035 38.7
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 2.7e-159 567.0 1072 37.1
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 5.7e-157 559.3 856 42.5
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 9.7e-157 558.5 1041 36.7
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.7e-156 557.8 1041 37.0
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 2.7e-154 550.4 1061 38.1
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 1.4e-150 538.1 1051 36.5
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 6.8e-150 535.8 1051 36.7
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 5.0e-145 519.6 1009 37.1
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.4e-142 511.5 1066 35.6
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.8e-142 511.1 1038 36.4
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.8e-142 511.1 1110 34.3
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 8.8e-142 508.8 1121 33.5
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.5e-141 508.1 1042 36.7
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.5e-141 508.1 1062 35.7
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.7e-140 504.6 1051 35.3
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 8.3e-140 502.3 728 46.3
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 9.2e-139 498.8 1040 34.9
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.0e-138 497.7 1053 34.9
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 8.6e-137 492.3 1066 34.3
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.1e-136 491.9 1057 34.9
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.2e-135 488.4 1068 34.5
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 3.6e-135 486.9 1053 34.6
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.5e-133 481.5 1048 34.4
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 7.5e-133 479.2 1054 34.1
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.2e-130 471.9 1061 34.5
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 7.8e-130 469.2 1049 33.0
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 5.6e-128 463.0 1071 33.7
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.2e-125 455.3 1042 34.4
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.0e-121 442.2 1054 32.7
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.5e-120 438.3 1015 33.3
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.3e-116 425.2 681 43.0
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 2.9e-116 424.1 1037 32.6
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 6.0e-114 416.4 1025 33.5
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 6.0e-114 416.4 1020 33.8
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 5.1e-113 413.3 722 40.9
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 1.2e-111 408.7 1022 31.6
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.6e-111 408.3 1062 33.3
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 2.4e-110 404.4 1053 33.2
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 3.1e-110 404.1 721 40.9
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 5.2e-110 403.3 1058 33.0
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 8.9e-110 402.5 978 33.5
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 5.8e-109 399.8 1136 31.2
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 7.6e-109 399.4 1052 30.9
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 1.3e-108 398.7 1042 32.3
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 6.4e-108 396.4 1027 31.7
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 8.4e-108 396.0 1138 30.5
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 9.2e-107 392.5 1040 32.5
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.6e-106 391.7 707 40.9
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.6e-106 391.7 973 32.3
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.0e-105 389.0 1050 30.9
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.5e-104 384.4 991 30.5
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.2e-101 375.6 992 32.6
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 7.6e-101 372.9 987 32.2
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 2.2e-100 371.3 926 31.9
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 6.4e-100 369.8 987 32.5
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 4.2e-99 367.1 1065 29.5
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 2.7e-98 364.4 734 38.1
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 2.7e-98 364.4 1063 31.2
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 5.1e-97 360.1 1030 30.0
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 5.1e-97 360.1 1034 31.6
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 6.6e-97 359.8 1064 28.8
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.1e-94 352.4 1136 29.1
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 5.8e-93 346.7 868 32.1
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.2e-90 339.0 1069 29.4
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 2.7e-90 337.8 1140 27.8
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 6.0e-90 336.7 1020 30.7
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 1.0e-89 335.9 1010 30.1
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.3e-89 335.5 1012 31.0
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 3.8e-84 317.4 1018 29.8
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 5.5e-83 313.5 1031 30.3
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 5.5e-83 313.5 1022 29.6
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 3.5e-82 310.8 761 33.4
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 6.0e-82 310.1 710 35.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.7e-81 306.2 970 29.4
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 2.8e-79 301.2 977 28.2
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.1e-78 299.3 769 31.3
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.8e-78 298.5 1029 28.6
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 2.0e-77 295.0 673 32.8
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 5.8e-77 293.5 821 30.6
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 7.6e-77 293.1 735 32.2
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 1.0e-76 292.7 773 31.4
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 3.8e-76 290.8 765 31.5
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 3.8e-76 290.8 765 31.5
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 2.5e-75 288.1 573 35.3
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.1e-72 279.3 641 32.9
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 9.0e-70 269.6 666 34.2
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 8.5e-68 263.1 664 34.6
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 3.9e-57 227.6 873 27.3
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 8.8e-57 226.5 269 50.2
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 6.3e-55 220.3 624 33.3
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 3.1e-54 218.0 422 36.5
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 3.8e-52 211.1 384 34.4
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 5.5e-51 207.2 692 28.8
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.7e-50 204.9 685 29.3
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.1e-48 199.5 1073 23.5
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.8e-46 192.2 318 34.6
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.9e-43 182.2 449 31.2
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 9.4e-43 179.9 658 28.3
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 2.1e-42 178.7 199 45.7
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.2e-40 172.9 931 25.9
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 9.7e-40 169.9 289 33.9
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 5.3e-38 164.1 645 25.7
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.7e-37 161.8 627 26.8
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.9e-37 160.6 426 32.4
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.0e-36 159.8 975 25.3
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 8.5e-36 156.8 326 33.7
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.0e-34 150.2 438 29.5
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 8.0e-34 150.2 692 25.4
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.3e-33 148.7 500 29.0
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 8.8e-33 146.7 654 27.8
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 1.3e-31 142.9 142 45.1
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 2.2e-31 142.1 221 42.5
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 2.4e-30 138.7 135 49.6
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.1e-30 138.3 169 42.6
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 9.1e-30 136.7 734 25.2
Glyma.20G205301 Glycine max HOM05D005259 ORTHO05D006402 3.5e-29 134.8 179 46.9
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 4.5e-29 134.4 143 47.6
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.9e-27 129.0 134 48.5
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 2.8e-26 125.2 217 35.5
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 6.1e-26 124.0 143 42.0
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 6.3e-23 114.0 115 48.7
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.2e-21 109.8 144 38.9
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.6e-21 109.4 150 40.7
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 5.0e-20 104.4 311 26.0
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.9e-19 102.4 369 25.7
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 5.6e-19 100.9 999 22.3
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 3.6e-18 98.2 59 74.6
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.8e-17 95.9 398 23.4
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.7e-15 89.4 416 26.2
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 8.0e-10 70.5 66 50.0
Glyma.20G205250 Glycine max HOM05D005259 ORTHO05D006402 2.6e-08 65.5 163 32.5


User provided reference genes

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