Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 0.0e+00 1636.7 816 100.0
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 0.0e+00 1493.4 822 91.5
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 0.0e+00 1276.2 836 76.4
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 0.0e+00 1273.8 828 76.3
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 0.0e+00 1141.3 823 69.6
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 0.0e+00 1137.1 828 69.1
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 0.0e+00 1126.3 818 69.7
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 0.0e+00 1113.2 824 69.2
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 0.0e+00 1107.8 823 68.4
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 8.8e-308 1060.1 842 64.5
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 8.8e-308 1060.1 841 64.2
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 1.8e-300 1035.8 880 61.6
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 3.0e-300 1035.0 835 62.6
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 8.8e-300 1033.5 849 62.1
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 2.6e-299 1031.9 849 62.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.8e-298 1027.7 842 62.5
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.4e-297 1025.4 825 62.7
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 5.4e-297 1024.2 831 62.7
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 4.5e-296 1021.1 826 62.3
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.9e-295 1018.5 823 62.8
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 3.2e-294 1015.0 839 61.9
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.2e-293 1013.1 843 62.0
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 3.0e-292 1008.4 825 61.9
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.0e-291 1005.7 831 60.4
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 4.1e-289 998.0 849 60.2
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 1.2e-288 996.5 844 60.2
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 4.5e-288 994.6 844 60.0
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 7.7e-288 993.8 844 61.4
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 3.3e-286 988.4 849 61.0
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 5.6e-286 987.6 829 60.8
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.6e-285 986.1 832 60.0
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 1.6e-285 986.1 838 61.5
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 2.1e-285 985.7 836 60.0
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.5e-283 979.5 831 59.3
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.0e-283 979.2 829 60.2
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 3.4e-283 978.4 844 60.0
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 5.7e-283 977.6 843 59.5
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.7e-282 976.1 830 59.2
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 5.4e-281 971.1 843 60.0
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 1.5e-278 963.0 838 59.2
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.5e-278 963.0 825 59.2
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 3.3e-278 961.8 842 58.9
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.2e-277 959.9 848 58.7
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 1.4e-276 956.4 828 61.0
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.8e-276 956.1 839 61.3
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 2.3e-276 955.7 835 58.7
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 2.3e-276 955.7 834 57.9
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.0e-276 954.9 832 59.1
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 5.2e-276 954.5 834 58.9
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 3.4e-275 951.8 817 59.7
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.3e-274 949.9 848 59.2
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 8.3e-274 947.2 839 59.2
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 7.0e-273 944.1 828 58.2
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 2.0e-272 942.6 817 61.2
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.0e-272 942.6 834 58.3
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 2.7e-272 942.2 836 58.7
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 7.8e-272 940.6 836 58.7
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.9e-270 936.0 834 57.3
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.9e-270 936.0 823 58.8
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.9e-270 936.0 825 59.0
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.2e-269 933.3 823 58.6
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.6e-269 932.9 843 56.9
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.6e-269 931.8 700 66.0
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 4.7e-269 931.4 859 58.1
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 1.1e-268 930.2 825 58.9
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.4e-268 929.9 829 57.4
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.2e-268 927.9 851 57.7
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 2.0e-267 926.0 895 55.0
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 5.8e-267 924.5 876 56.2
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 9.8e-267 923.7 826 57.6
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 9.8e-267 923.7 851 57.6
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 3.7e-266 921.8 858 57.3
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 8.3e-266 920.6 858 57.2
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 8.3e-266 920.6 812 58.3
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.4e-265 919.8 858 57.2
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.9e-265 919.5 847 57.4
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.4e-265 919.1 836 58.0
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 5.4e-265 917.9 778 61.2
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 9.2e-265 917.1 845 57.4
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 2.7e-264 915.6 848 57.9
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 3.5e-264 915.2 842 57.5
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 4.6e-264 914.8 759 62.6
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 7.8e-264 914.1 858 56.8
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 1.0e-263 913.7 807 58.9
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 1.7e-263 912.9 838 56.4
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 1.7e-263 912.9 812 58.0
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 3.9e-263 911.8 823 58.8
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 5.1e-263 911.4 829 57.5
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.5e-262 909.8 842 56.8
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.9e-262 909.4 826 57.5
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 5.6e-262 907.9 745 60.5
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 9.5e-262 907.1 846 57.1
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 1.2e-261 906.7 846 57.1
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 1.6e-261 906.4 849 56.9
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 2.1e-261 906.0 828 56.8
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 2.1e-261 906.0 844 56.9
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 4.7e-261 904.8 851 56.6
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 8.1e-261 904.0 841 56.8
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.1e-260 903.7 721 62.7
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.4e-260 903.3 845 56.3
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 1.4e-260 903.3 780 59.1
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 4.0e-260 901.7 819 57.4
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 7.6e-259 897.5 764 61.5
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 9.9e-259 897.1 842 57.0
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 9.9e-259 897.1 842 57.0
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 1.3e-258 896.7 817 57.6
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.1e-257 893.6 843 56.1
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 1.9e-257 892.9 822 57.4
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.4e-257 892.5 830 56.4
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.4e-257 892.5 860 55.9
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 3.2e-257 892.1 840 56.7
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 3.2e-257 892.1 820 57.1
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.7e-256 889.0 871 54.5
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 2.7e-256 889.0 817 56.3
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 1.3e-255 886.7 820 57.0
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.1e-252 877.1 837 56.8
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 4.0e-252 875.2 825 56.5
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.2e-251 873.6 849 54.4
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 7.6e-251 870.9 876 53.4
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 1.7e-250 869.8 822 55.1
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 6.4e-250 867.8 744 60.5
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.4e-249 866.7 825 56.2
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 7.1e-249 864.4 844 53.9
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.7e-248 862.4 817 55.9
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 7.8e-248 860.9 827 57.4
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 3.9e-247 858.6 834 55.3
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 5.1e-247 858.2 806 56.3
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.3e-246 855.5 741 58.0
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 4.8e-245 851.7 814 55.9
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.1e-244 850.5 816 55.5
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.1e-244 850.5 810 56.0
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 7.6e-243 844.3 837 53.4
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.2e-241 839.0 647 66.2
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 3.2e-241 839.0 834 51.8
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.9e-238 829.7 849 52.9
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.3e-237 827.0 846 53.2
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 6.9e-236 821.2 744 55.0
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 3.8e-234 815.5 819 54.1
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 2.5e-230 802.7 840 51.5
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 5.3e-228 795.0 835 50.8
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 6.7e-223 778.1 824 50.7
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 5.3e-212 741.9 700 54.9
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 2.6e-206 723.0 718 56.3
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 4.4e-166 589.3 592 54.4
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.3e-162 577.8 899 37.7
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 9.2e-156 555.1 927 37.0
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 2.3e-151 540.4 442 62.7
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 1.5e-150 537.7 849 36.6
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.7e-147 526.9 939 35.7
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 2.4e-132 477.2 916 33.6
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.7e-120 436.8 407 55.0
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 6.0e-115 419.5 453 50.6
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 1.5e-110 404.8 640 37.5
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.2e-107 395.2 497 44.7
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.1e-100 372.1 324 60.5
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.3e-88 332.0 300 58.3
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.6e-83 315.1 269 62.1
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 4.1e-79 300.4 694 33.1
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 3.6e-75 287.3 331 46.5
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 1.1e-71 275.8 265 55.5
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 7.2e-68 263.1 273 51.3
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 3.6e-67 260.8 225 56.9
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 8.6e-61 239.6 156 75.0
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 6.3e-56 223.4 264 48.5
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 2.0e-54 218.4 939 23.5
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 8.0e-43 179.9 119 76.5
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.6e-38 165.6 194 44.3
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.5e-36 159.1 111 68.5
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 3.6e-35 154.5 170 52.9
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 6.8e-34 150.2 196 42.9
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.2e-33 149.4 912 23.5
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 5.8e-33 147.1 196 41.8
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 6.4e-32 143.7 466 27.9
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.1e-31 142.9 106 62.3
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 1.3e-29 136.0 115 57.4
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 3.9e-29 134.4 665 24.7
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 6.0e-22 110.5 110 51.8
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 5.1e-21 107.5 93 63.4
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.6e-14 84.3 117 43.6
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.7e-13 82.4 110 42.7
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.1e-13 80.9 105 43.8
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.3e-12 77.8 103 44.7
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.3e-12 77.8 117 42.7


User provided reference genes

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