Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 1.6e-231 805.8 423 100.0
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 7.7e-231 803.5 423 99.8
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.8e-212 741.9 423 90.5
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.2e-210 736.5 422 89.8
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 1.5e-210 736.1 422 89.1
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 1.7e-209 732.6 423 89.4
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.1e-208 729.9 420 89.5
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 1.8e-208 729.2 423 88.2
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 2.4e-208 728.8 423 88.9
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 4.5e-207 724.5 422 88.6
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 4.5e-207 724.5 420 88.8
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 7.8e-207 723.8 419 89.3
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.0e-206 723.4 419 89.5
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.9e-206 721.8 420 87.9
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 3.8e-206 721.5 423 87.9
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.0e-206 721.1 420 88.8
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 6.6e-206 720.7 420 88.1
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 1.1e-205 719.9 419 88.3
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.1e-205 719.9 423 86.8
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 2.5e-205 718.8 422 87.9
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 3.3e-205 718.4 420 87.6
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 3.3e-205 718.4 420 88.3
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 3.3e-205 718.4 422 89.1
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 3.3e-205 718.4 419 87.6
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 3.3e-205 718.4 420 87.9
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 4.3e-205 718.0 422 87.7
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 4.3e-205 718.0 423 86.8
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 5.6e-205 717.6 422 86.7
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 5.6e-205 717.6 422 88.6
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 5.6e-205 717.6 422 87.2
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 7.3e-205 717.2 423 87.0
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 7.3e-205 717.2 420 87.9
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 7.3e-205 717.2 419 87.8
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 1.2e-204 716.5 422 87.7
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.6e-204 716.1 420 87.6
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.6e-204 716.1 422 86.3
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.1e-204 715.7 422 86.3
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 2.8e-204 715.3 422 88.6
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 2.8e-204 715.3 422 87.0
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 3.6e-204 714.9 421 86.9
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 4.7e-204 714.5 423 87.0
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 4.7e-204 714.5 422 87.4
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 6.1e-204 714.1 423 86.1
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 6.1e-204 714.1 422 86.5
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 6.1e-204 714.1 422 85.5
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 8.0e-204 713.8 419 87.4
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.4e-203 713.0 419 86.4
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.4e-203 713.0 419 86.2
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 1.4e-203 713.0 423 86.3
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 3.0e-203 711.8 422 87.0
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 3.0e-203 711.8 423 86.5
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 4.0e-203 711.4 420 87.1
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 4.0e-203 711.4 421 86.5
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 4.0e-203 711.4 421 86.5
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.2e-203 711.1 431 85.2
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 5.2e-203 711.1 422 86.3
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 5.2e-203 711.1 419 86.9
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 5.2e-203 711.1 422 87.2
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 6.8e-203 710.7 423 85.8
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 8.9e-203 710.3 420 86.9
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 8.9e-203 710.3 422 86.0
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 8.9e-203 710.3 421 86.2
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 8.9e-203 710.3 423 86.5
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.2e-202 709.9 440 84.8
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 1.5e-202 709.5 420 87.4
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 1.5e-202 709.5 420 86.9
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 1.5e-202 709.5 423 86.1
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.0e-202 709.1 422 87.0
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 87.8
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 2.6e-202 708.8 422 87.0
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 2.6e-202 708.8 422 87.0
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.6e-202 708.8 423 86.1
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 2.6e-202 708.8 422 86.5
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 2.6e-202 708.8 423 86.1
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 3.4e-202 708.4 422 87.0
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 3.4e-202 708.4 422 87.0
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 4.4e-202 708.0 422 86.7
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 4.4e-202 708.0 419 86.6
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 4.4e-202 708.0 422 86.3
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.7e-202 707.6 420 85.7
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 7.5e-202 707.2 422 86.7
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 7.5e-202 707.2 431 84.9
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 7.5e-202 707.2 422 86.3
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 9.8e-202 706.8 422 86.5
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 9.8e-202 706.8 419 86.4
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 9.8e-202 706.8 422 85.5
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 9.8e-202 706.8 423 85.8
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.3e-201 706.4 423 86.8
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 1.7e-201 706.1 422 86.5
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.7e-201 706.1 423 85.3
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 2.2e-201 705.7 420 86.7
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.2e-201 705.7 425 85.9
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 2.9e-201 705.3 423 85.6
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.9e-201 705.3 423 85.3
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 2.9e-201 705.3 424 85.8
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.9e-201 705.3 419 86.2
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 3.7e-201 704.9 422 86.3
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 3.7e-201 704.9 422 86.3
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 4.9e-201 704.5 419 86.9
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 6.4e-201 704.1 419 85.9
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 6.4e-201 704.1 419 85.7
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 8.3e-201 703.7 471 80.3
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 8.3e-201 703.7 471 80.3
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 8.3e-201 703.7 438 83.3
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.1e-200 703.4 423 84.6
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 2.4e-200 702.2 422 86.3
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 9.2e-200 700.3 423 84.2
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 1.0e-198 696.8 423 85.3
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.7e-198 696.0 438 82.4
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.7e-198 696.0 418 85.4
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 6.6e-198 694.1 423 83.9
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 6.6e-198 694.1 452 82.3
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 7.3e-197 690.6 423 86.5
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 9.5e-197 690.3 432 83.3
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 2.1e-196 689.1 453 79.9
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.4e-195 686.4 423 84.2
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 1.2e-191 673.3 426 80.5
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 2.7e-191 672.2 388 89.2
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.5e-189 666.4 423 82.5
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.5e-189 665.6 392 86.2
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 3.3e-189 665.2 389 87.7
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 9.5e-189 663.7 502 71.9
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 5.8e-186 654.4 375 89.3
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.9e-185 651.4 473 75.1
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.4e-184 649.0 421 80.5
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 6.6e-182 641.0 416 82.5
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.1e-181 640.2 363 89.3
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 6.2e-180 634.4 397 80.6
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 8.9e-179 630.6 378 83.9
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 2.9e-177 625.5 373 85.3
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 4.9e-177 624.8 400 79.8
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 3.6e-172 608.6 415 74.2
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 4.4e-170 601.7 423 75.7
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 2.9e-169 599.0 408 73.5
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.9e-166 588.6 410 76.6
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 6.4e-161 571.2 334 87.1
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 5.3e-155 551.6 310 91.3
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 6.7e-150 534.6 397 67.8
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 2.5e-149 532.7 422 65.2
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 5.5e-144 515.0 404 65.8
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 4.1e-139 498.8 280 92.1
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 9.0e-139 497.7 459 63.4
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 4.1e-131 472.2 284 84.9
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.0e-126 457.6 392 67.1
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 1.8e-126 456.8 260 88.8
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.5e-114 416.0 243 87.7
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 9.1e-107 391.3 236 82.6
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 5.0e-105 385.6 225 87.6
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.6e-98 364.0 244 77.0
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 8.6e-97 358.2 205 88.8
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 6.2e-79 298.9 288 59.7
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 7.8e-74 282.0 296 51.4
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 1.4e-70 271.2 207 69.1
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 6.2e-63 245.7 147 83.0
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 3.8e-60 236.5 189 61.9
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 3.0e-49 200.3 198 62.6
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.6e-47 194.5 134 73.1
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 2.6e-45 187.2 114 88.6
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 5.4e-43 179.5 130 69.2
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 4.8e-39 166.4 150 66.7
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 4.8e-39 166.4 290 36.2
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 2.0e-37 161.0 109 78.9
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 7.1e-35 152.5 157 58.0
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 9.3e-35 152.1 157 57.3
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 4.9e-28 129.8 178 38.8
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 4.2e-27 126.7 82 80.5
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 5.7e-24 116.3 149 49.7
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.9e-21 106.3 69 76.8
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.8e-14 84.7 50 90.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 1.5e-13 81.6 53 81.1
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 3.4e-13 80.5 100 51.0
Haze_26311 Corylus avellana HOM05D002944 ORTHO05D003377 1.4e-11 75.1 363 28.4
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 1.4e-11 75.1 40 92.5
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 3.3e-08 63.9 37 81.1
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 6.3e-07 59.7 60 55.0
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.8e-06 58.2 113 33.6
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 3.1e-06 57.4 111 33.3
Gohir.D04G179200 Gossypium hirsutum HOM05D002061 ORTHO05D002849 7.0e-06 56.2 411 25.1


User provided reference genes

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