Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G1575 Papaver somniferum HOM05D004736 ORTHO05D030424 2.2e-54 215.3 106 100.0
PSO541G6250 Papaver somniferum HOM05D004736 ORTHO05D030424 1.2e-34 149.8 89 80.9
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 6.4e-33 144.1 78 87.2
PSO151G0150 Papaver somniferum HOM05D004736 ORTHO05D006424 1.9e-29 132.5 68 92.6
PSO339G4417 Papaver somniferum HOM05D004736 ORTHO05D006424 1.9e-29 132.5 68 92.6
Haze_19912 Corylus avellana HOM05D004736 ORTHO05D006424 7.3e-29 130.6 75 84.0
PGR031G2657 Punica granatum HOM05D004736 ORTHO05D006424 9.5e-29 130.2 77 81.8
Ca_00461_v3 Cicer arietinum L. HOM05D004736 ORTHO05D006424 1.2e-28 129.8 68 91.2
Atru.chr1.1029 Acer truncatum HOM05D004736 ORTHO05D006424 3.6e-28 128.3 68 89.7
Psat1g195560 Pisum sativum HOM05D004736 ORTHO05D006424 4.7e-28 127.9 68 89.7
TPR.G4590 Trifolium pratense HOM05D004736 ORTHO05D006424 4.7e-28 127.9 68 89.7
Cc06_g16570 Coffea canephora HOM05D004736 ORTHO05D006424 6.2e-28 127.5 68 89.7
ECA247G3948 Erigeron canadensis HOM05D004736 ORTHO05D006424 6.2e-28 127.5 68 89.7
HanXRQChr16g0517691 Helianthus annuus HOM05D004736 ORTHO05D006424 6.2e-28 127.5 68 89.7
Lj1A1176G54 Lonicera japonica HOM05D004736 ORTHO05D006424 6.2e-28 127.5 68 89.7
Lj8A7T16 Lonicera japonica HOM05D004736 ORTHO05D006424 6.2e-28 127.5 68 89.7
TWI36G0105 Tripterygium wilfordii HOM05D004736 ORTHO05D006424 6.2e-28 127.5 68 89.7
Ciclev10005464m.g Citrus clementina HOM05D004736 ORTHO05D006424 1.0e-27 126.7 68 88.2
Dinv17005 Davidia involucrata HOM05D004736 ORTHO05D006424 1.0e-27 126.7 68 88.2
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 1.0e-27 126.7 68 88.2
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 1.0e-27 126.7 68 88.2
Medtr2g016690 Medicago truncatula HOM05D004736 ORTHO05D006424 1.0e-27 126.7 68 88.2
TAR628G0315 Trochodendron aralioides HOM05D004736 ORTHO05D006424 1.0e-27 126.7 70 87.1
DCAR_016999 Daucus carota HOM05D004736 ORTHO05D006424 1.4e-27 126.3 68 88.2
Eucgr.A02398 Eucalyptus grandis HOM05D004736 ORTHO05D006424 1.4e-27 126.3 68 88.2
SalBow1G5652 Salvia bowleyana HOM05D004736 ORTHO05D006424 1.4e-27 126.3 88 71.6
Actinidia38567 Actinidia chinensis HOM05D004736 ORTHO05D006424 1.8e-27 125.9 68 88.2
MSTRG.6450 Avicennia marina HOM05D004736 ORTHO05D006424 1.8e-27 125.9 68 88.2
CSS0036113 Camellia sinensis var. sinensis HOM05D004736 ORTHO05D006424 1.8e-27 125.9 68 88.2
MELO3C009659.2 Cucumis melo HOM05D004736 ORTHO05D006424 1.8e-27 125.9 70 87.1
Dinv24126 Davidia involucrata HOM05D004736 ORTHO05D006424 1.8e-27 125.9 68 88.2
Manes.05G190600 Manihot esculenta HOM05D004736 ORTHO05D006424 1.8e-27 125.9 68 88.2
Oeu018009.1 Olea europaea HOM05D004736 ORTHO05D006424 1.8e-27 125.9 68 88.2
Oeu064319.1 Olea europaea HOM05D004736 ORTHO05D006424 1.8e-27 125.9 68 88.2
Solyc03g059310.3 Solanum lycopersicum HOM05D004736 ORTHO05D006424 1.8e-27 125.9 68 86.8
Sopen03g013810 Solanum pennellii HOM05D004736 ORTHO05D006424 1.8e-27 125.9 68 86.8
vmacro09094 Vaccinium macrocarpon HOM05D004736 ORTHO05D006424 1.8e-27 125.9 68 88.2
GSVIVG01033328001 Vitis vinifera HOM05D004736 ORTHO05D006424 1.8e-27 125.9 68 88.2
Aqoxy2G02127 Aquilegia oxysepala HOM05D004736 ORTHO05D006424 2.3e-27 125.6 68 88.2
Cpa.g.sc92.4 Carica papaya HOM05D004736 ORTHO05D006424 2.3e-27 125.6 68 88.2
Migut.K00069 Erythranthe guttata HOM05D004736 ORTHO05D006424 2.3e-27 125.6 68 88.2
Lsat_1_v5_gn_1_13520 Lactuca sativa HOM05D004736 ORTHO05D006424 2.3e-27 125.6 64 92.2
Lj6g0012418 Lotus japonicus HOM05D004736 ORTHO05D006424 2.3e-27 125.6 68 88.2
Lalb_Chr18g0054721 Lupinus albus HOM05D004736 ORTHO05D006424 2.3e-27 125.6 68 88.2
Nitab4.5_0004538g0010 Nicotiana tabacum HOM05D004736 ORTHO05D006424 2.3e-27 125.6 68 85.3
Peaxi162Scf00189g00319 Petunia axillaris HOM05D004736 ORTHO05D006424 2.3e-27 125.6 68 85.3
Rhsim04G0099500 Rhododendron simsii HOM05D004736 ORTHO05D006424 2.3e-27 125.6 84 72.6
CiPaw.10G031000 Carya illinoinensis HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 88.2
FvH4_6g23200 Fragaria vesca HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 88.2
FAN02G0078 Fragaria x ananassa HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 88.2
FAN05G2919 Fragaria x ananassa HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 88.2
Glyma.13G227200 Glycine max HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 88.2
Glyma.15G085200 Glycine max HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 88.2
Hma1.2p1_0418F.1_g149210 Hydrangea macrophylla HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 86.8
Phvul.006G173700 Phaseolus vulgaris HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 88.2
Prupe.7G067800 Prunus persica HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 88.2
QL07p021737 Quercus lobata HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 88.2
RcHm_v2.0_Chr3g0481011 Rosa chinensis HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 88.2
VMungo0540G2280 Vigna mungo HOM05D004736 ORTHO05D006424 3.1e-27 125.2 68 88.2
ATR0559G151 Amborella trichopoda HOM05D004736 ORTHO05D006424 4.0e-27 124.8 68 86.8
CSS0019519 Camellia sinensis var. sinensis HOM05D004736 ORTHO05D006424 6.8e-27 124.0 64 90.6
Gohir.A01G196200 Gossypium hirsutum HOM05D004736 ORTHO05D006424 6.8e-27 124.0 68 86.8
Gohir.D01G186500 Gossypium hirsutum HOM05D004736 ORTHO05D006424 6.8e-27 124.0 68 86.8
Gorai.002G229900 Gossypium raimondii HOM05D004736 ORTHO05D006424 6.8e-27 124.0 68 86.8
Nn4g25079 Nelumbo nucifera HOM05D004736 ORTHO05D006424 6.8e-27 124.0 68 86.8
Pp3c11_25160 Physcomitrium patens HOM05D004736 ORTHO05D006424 6.8e-27 124.0 68 86.8
Thecc.05G162800 Theobroma cacao HOM05D004736 ORTHO05D006424 6.8e-27 124.0 68 86.8
Cfa016861 Carpinus fangiana HOM05D004736 ORTHO05D006424 8.9e-27 123.6 68 86.8
Duzib093G0982 Durio zibethinus HOM05D004736 ORTHO05D006424 8.9e-27 123.6 68 86.8
ClCG10G017240 Citrullus lanatus HOM05D004736 ORTHO05D006424 1.2e-26 123.2 64 90.6
PSO339G3699 Papaver somniferum HOM05D004736 ORTHO05D006424 1.2e-26 123.2 68 86.8
PSO384G0718 Papaver somniferum HOM05D004736 ORTHO05D006424 1.2e-26 123.2 68 86.8
GSVIVG01024957001 Vitis vinifera HOM05D004736 ORTHO05D006424 1.5e-26 122.9 68 86.8
arahy.Tifrunner.gnm1.ann1.0PUU86 Arachis hypogaea HOM05D004736 ORTHO05D006424 2.0e-26 122.5 69 88.4
arahy.Tifrunner.gnm1.ann1.K7PES2 Arachis hypogaea HOM05D004736 ORTHO05D006424 2.0e-26 122.5 69 88.4
Sed0000735 Sechium edule HOM05D004736 ORTHO05D006424 2.6e-26 122.1 68 85.3
SEGI_13063 Sequoiadendron giganteum HOM05D004736 ORTHO05D006424 2.6e-26 122.1 68 86.8
SGA_v2.0_scaffold62G21541 Striga asiatica HOM05D004736 ORTHO05D006424 2.6e-26 122.1 68 85.3
SGA_v2.0_scaffold94G28453 Striga asiatica HOM05D004736 ORTHO05D006424 3.4e-26 121.7 68 85.3
Hund24745 Selenicereus undatus HOM05D004736 ORTHO05D006424 4.4e-26 121.3 68 82.4
Zm00001eb114830 Zea mays HOM05D004736 ORTHO05D006424 4.4e-26 121.3 70 82.9
COL.COLO4_28679 Corchorus olitorius HOM05D004736 ORTHO05D006424 5.8e-26 120.9 68 85.3
Lalb_Chr20g0117571 Lupinus albus HOM05D004736 ORTHO05D006424 5.8e-26 120.9 68 83.8
Potri.016G052800 Populus trichocarpa HOM05D004736 ORTHO05D006424 5.8e-26 120.9 68 85.3
Sabra16G0056000 Salix brachista HOM05D004736 ORTHO05D006424 5.8e-26 120.9 68 85.3
Os03g0681700 Oryza sativa ssp. japonica HOM05D004736 ORTHO05D006424 7.5e-26 120.6 68 83.8
Sp3g16250 Schrenkiella parvula HOM05D004736 ORTHO05D006424 9.8e-26 120.2 77 76.6
Sc13g0001970 Simmondsia chinensis HOM05D004736 ORTHO05D006424 9.8e-26 120.2 68 82.4
THA.LOC104820361 Tarenaya hassleriana HOM05D004736 ORTHO05D006424 9.8e-26 120.2 77 76.6
unitig_26.g9041 Utricularia gibba HOM05D004736 ORTHO05D006424 9.8e-26 120.2 70 81.4
HPP92_003386 Vanilla planifolia HOM05D004736 ORTHO05D006424 9.8e-26 120.2 68 83.8
HPP92_003388 Vanilla planifolia HOM05D004736 ORTHO05D006424 9.8e-26 120.2 68 83.8
Duzib106G0765 Durio zibethinus HOM05D004736 ORTHO05D006424 1.3e-25 119.8 68 83.8
MD14G1066600 Malus domestica HOM05D004736 ORTHO05D006424 1.3e-25 119.8 68 83.8
FAN14G3352 Fragaria x ananassa HOM05D004736 ORTHO05D006424 2.2e-25 119.0 73 82.2
AL3G31290 Arabidopsis lyrata HOM05D004736 ORTHO05D006424 3.7e-25 118.2 77 75.3
AT3G18140 Arabidopsis thaliana HOM05D004736 ORTHO05D006424 3.7e-25 118.2 77 75.3
Carub.0003s1786 Capsella rubella HOM05D004736 ORTHO05D006424 3.7e-25 118.2 77 75.3
CARHR093440 Cardamine hirsuta HOM05D004736 ORTHO05D006424 3.7e-25 118.2 77 75.3
SHI12817 Sapria himalayana HOM05D004736 ORTHO05D006424 3.7e-25 118.2 81 72.8
FAN09G0911 Fragaria x ananassa HOM05D004736 ORTHO05D006424 4.9e-25 117.9 74 79.7
Ah.04g151930 Amaranthus hybridus HOM05D004736 ORTHO05D006424 6.4e-25 117.5 68 82.4
AUR62024392 Chenopodium quinoa HOM05D004736 ORTHO05D006424 8.3e-25 117.1 68 82.4
AUR62025989 Chenopodium quinoa HOM05D004736 ORTHO05D006424 8.3e-25 117.1 68 82.4
A05p31660 Brassica napus HOM05D004736 ORTHO05D006424 1.4e-24 116.3 77 74.0
C05p48040 Brassica napus HOM05D004736 ORTHO05D006424 1.4e-24 116.3 77 74.0
BraA05t21999Z Brassica rapa HOM05D004736 ORTHO05D006424 1.4e-24 116.3 72 76.4
Thhalv10021207m.g Eutrema salsugineum HOM05D004736 ORTHO05D006424 1.4e-24 116.3 77 74.0
MD12G1066500 Malus domestica HOM05D004736 ORTHO05D006424 1.9e-24 115.9 69 84.1
EL10Ac3g07012 Beta vulgaris HOM05D004736 ORTHO05D006424 3.2e-24 115.2 68 80.9
BcaC05g28666 Brassica carinata HOM05D004736 ORTHO05D006424 3.2e-24 115.2 68 79.4
Aa31LG8G4970 Aethionema arabicum HOM05D002288 ORTHO05D002894 5.4e-24 114.4 79 68.4
CDE07G0848 Ceratophyllum demersum HOM05D004736 ORTHO05D006424 5.4e-24 114.4 68 82.4
CDE04G2152 Ceratophyllum demersum HOM05D004736 ORTHO05D006424 1.6e-23 112.8 68 80.9
AL4G11350 Arabidopsis lyrata HOM05D004736 ORTHO05D006424 4.6e-23 111.3 77 70.1
Mapoly0012s0149 Marchantia polymorpha HOM05D004736 ORTHO05D006424 6.0e-23 110.9 70 74.3
CARHR113170 Cardamine hirsuta HOM05D004736 ORTHO05D006424 7.8e-23 110.5 70 74.3
Carub.0004s0119 Capsella rubella HOM05D004736 ORTHO05D006424 5.6e-21 104.4 77 68.8
MCO14G383 Micromonas commoda HOM05D004736 ORTHO05D006424 2.1e-20 102.4 68 70.6
AT2G22040 Arabidopsis thaliana HOM05D004736 ORTHO05D006424 2.8e-20 102.1 70 68.6
CBR_g49895 Chara braunii HOM05D004736 ORTHO05D006424 3.6e-20 101.7 65 76.9
SMO236G0112 Selaginella moellendorffii HOM05D004736 ORTHO05D006424 2.3e-19 99.0 65 70.8
Cre17.g713900 Chlamydomonas reinhardtii HOM05D004736 ORTHO05D006424 1.2e-18 96.7 68 64.7
Nitab4.5_0008117g0050 Nicotiana tabacum HOM05D004736 ORTHO05D006424 5.8e-18 94.4 56 78.6
BcaC07g41105 Brassica carinata HOM05D004736 ORTHO05D006424 9.8e-18 93.6 74 58.1
AagrBONN_evm.TU.Sc2ySwM_228.1939 Anthoceros agrestis HOM05D004736 ORTHO05D006424 2.9e-17 92.0 65 69.2
Sp4g01080 Schrenkiella parvula HOM05D004736 ORTHO05D006424 2.9e-17 92.0 65 63.1
C08p41070 Brassica napus HOM05D004736 ORTHO05D006424 8.3e-17 90.5 74 56.8
BolC8t51671H Brassica oleracea HOM05D004736 ORTHO05D006424 8.3e-17 90.5 74 56.8
BcaC07g41100 Brassica carinata HOM05D004736 ORTHO05D006424 1.1e-16 90.1 65 60.0
A09p57830 Brassica napus HOM05D004736 ORTHO05D006424 3.2e-16 88.6 74 55.4
BraA09t41176Z Brassica rapa HOM05D004736 ORTHO05D006424 5.4e-16 87.8 74 55.4
Thhalv10000630m.g Eutrema salsugineum HOM05D004736 ORTHO05D006424 9.2e-16 87.0 65 63.1
Lsat_1_v5_gn_5_97320 Lactuca sativa HOM05D004736 ORTHO05D006424 5.1e-14 81.3 63 63.5
PRCOL_00005554 Prasinoderma coloniale HOM05D004736 ORTHO05D006424 7.3e-13 77.4 84 52.4
TPR.G20938 Trifolium pratense HOM05D004736 ORTHO05D030424 4.9e-09 64.7 29 96.6
Lsat_1_v5_gn_3_125721 Lactuca sativa HOM05D004736 ORTHO05D006424 1.9e-08 62.8 59 54.2
Lsat_1_v5_gn_2_37301 Lactuca sativa HOM05D004736 ORTHO05D006424 3.2e-08 62.0 36 77.8
Lsat_1_v5_gn_6_12661 Lactuca sativa HOM05D004736 ORTHO05D011576 3.2e-08 62.0 36 77.8
BolC5t33511H Brassica oleracea HOM05D004736 ORTHO05D006424 5.4e-08 61.2 34 79.4
Lsat_1_v5_gn_8_137581 Lactuca sativa HOM05D004736 ORTHO05D011576 9.2e-08 60.5 36 75.0
Cfa022040 Carpinus fangiana HOM05D004736 ORTHO05D006424 4.6e-07 58.2 74 48.6
Lsat_1_v5_gn_4_12620 Lactuca sativa HOM05D004736 ORTHO05D230337 2.3e-06 55.8 32 78.1
Lsat_1_v5_gn_6_107640 Lactuca sativa HOM05D004736 ORTHO05D011576 2.3e-06 55.8 32 78.1
Haze_19845 Corylus avellana HOM05D004736 ORTHO05D006424 3.9e-06 55.1 33 81.8


User provided reference genes

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