Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 2101.6 1072 100.0
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1699.5 1072 78.8
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1692.9 1075 77.9
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1643.2 1074 76.2
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1638.2 1073 75.2
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1631.3 1077 75.6
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1626.7 1079 75.4
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1624.0 1073 75.4
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1614.4 1073 74.8
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1614.0 1000 79.2
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1612.0 1077 74.1
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1610.5 1077 74.3
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1607.4 1077 74.2
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1602.8 1077 73.4
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1600.5 1079 74.0
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1598.2 1117 73.1
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1596.6 1085 72.8
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1590.1 1077 73.7
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1588.5 1076 73.2
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1587.4 1076 74.0
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1585.9 1073 73.5
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1585.1 1078 73.5
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1584.3 1072 73.1
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1578.5 1072 73.4
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1572.0 1072 72.9
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1570.4 1093 72.9
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1568.5 1078 72.0
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1561.6 1081 71.6
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1561.6 1085 72.2
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1557.0 1072 72.3
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1554.7 1072 72.0
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1546.6 1078 72.0
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1546.2 1073 71.9
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1542.3 1019 75.4
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1538.1 1072 71.7
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1535.4 1074 71.0
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1535.0 1078 72.0
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1534.6 1075 71.4
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1526.5 1073 70.9
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1524.2 1112 69.8
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1522.7 1078 71.3
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1522.3 1078 71.8
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1519.2 1082 71.0
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1518.1 1074 70.2
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1516.5 997 74.6
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1516.1 999 75.0
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1515.7 1069 70.3
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1515.4 1084 70.5
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1514.6 1076 70.8
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1512.3 1074 70.9
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1510.7 1074 71.6
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1507.3 1148 67.4
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1488.4 971 75.1
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1487.6 1076 69.9
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1485.7 1076 70.2
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1473.8 1100 68.2
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1471.8 1071 69.1
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1468.4 1071 69.0
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1468.4 1163 64.8
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1468.0 948 76.1
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1462.2 1076 69.1
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1461.0 949 77.0
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1460.7 1077 69.2
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1459.9 1104 67.5
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1457.2 965 74.1
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1448.0 988 72.2
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1442.6 1222 62.9
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1441.8 1078 68.7
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1440.6 1019 70.6
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1431.0 1073 68.0
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1423.3 1022 69.1
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1418.3 947 74.1
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1416.7 1098 66.3
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1412.1 978 71.9
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1404.0 998 70.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1374.4 978 69.0
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1320.8 1195 59.6
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1289.6 868 74.1
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1285.0 1032 62.8
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1274.6 1032 62.3
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1269.6 1123 60.0
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1257.7 891 71.5
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1255.7 1031 62.2
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1253.4 1091 61.2
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1239.9 967 66.6
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1182.5 1078 55.0
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1122.1 1134 54.1
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 0.0e+00 1085.5 691 79.2
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 0.0e+00 1084.3 1043 54.7
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 9.8e-307 1057.0 1100 54.1
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 3.1e-292 1008.8 1022 52.7
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 8.9e-292 1007.3 751 66.2
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 7.0e-289 997.7 1044 50.7
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 2.6e-283 979.2 1001 53.5
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 2.6e-251 872.8 616 70.6
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 6.4e-250 868.2 599 73.6
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 2.9e-226 789.6 584 65.9
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 6.3e-205 718.8 508 72.2
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 1.2e-198 698.0 518 69.1
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 4.4e-198 696.0 472 72.2
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 1.0e-191 674.9 623 59.1
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.5e-187 659.8 459 71.7
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.1e-184 650.6 817 49.2
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 3.1e-167 593.6 410 69.5
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.3e-165 588.2 629 53.7
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 9.2e-164 582.0 389 75.3
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 5.1e-154 549.7 397 68.5
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 5.6e-145 519.6 359 75.5
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 5.1e-130 469.9 285 79.3
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 1.5e-126 458.4 343 71.4
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 7.6e-126 456.1 328 69.8
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.5e-124 451.1 317 73.5
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 4.3e-121 440.3 392 60.2
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 9.7e-113 412.5 294 69.0
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.4e-108 396.0 818 36.7
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 8.2e-104 382.9 269 72.9
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.0e-90 339.3 240 67.5
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.3e-88 332.4 218 76.1
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 3.4e-81 307.8 292 49.7
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 3.6e-59 234.6 174 69.0
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 1.0e-53 216.5 184 60.9
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 2.1e-51 208.8 142 71.8
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 5.2e-50 204.1 197 57.4
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 7.8e-46 190.3 150 62.0
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.3e-35 156.4 148 57.4
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 2.1e-35 155.6 127 60.6
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 2.1e-35 155.6 106 72.6
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 6.2e-35 154.1 124 56.5
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 2.9e-32 145.2 89 76.4
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.4e-31 142.9 112 61.6
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 4.2e-31 141.4 203 41.4
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 2.1e-30 139.0 100 64.0
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 3.5e-30 138.3 93 73.1
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 5.3e-26 124.4 131 57.3
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 5.3e-26 124.4 131 57.3
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 2.2e-24 119.0 112 53.6
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 6.4e-24 117.5 99 57.6
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.9e-23 115.9 86 61.6
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.9e-20 105.9 73 72.6
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.3e-20 105.1 70 71.4
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 2.1e-19 102.4 73 68.5
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 2.4e-18 99.0 192 33.3
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 2.9e-16 92.0 132 41.7
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.2e-15 88.2 67 67.2
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 3.5e-14 85.1 54 72.2
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 3.0e-13 82.0 109 47.7
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 3.4e-09 68.6 59 62.7
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 1.1e-07 63.5 55 56.4
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 1.4e-07 63.2 46 63.0
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 1.4e-07 63.2 46 63.0
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 1.4e-07 63.2 46 63.0
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 2.5e-07 62.4 46 63.0
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 7.2e-07 60.8 55 54.5
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 9.3e-07 60.5 46 60.9
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 1.2e-06 60.1 46 60.9
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 2.7e-06 58.9 37 67.6
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 4.6e-06 58.2 45 60.0


User provided reference genes

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