Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 7.6e-242 840.9 735 100.0
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 5.6e-221 771.5 717 97.5
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 3.0e-105 387.1 717 71.8
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 1.1e-104 385.2 624 76.1
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 4.8e-103 379.8 710 71.5
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 5.3e-102 376.3 668 73.4
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.5e-101 374.8 668 72.8
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 3.4e-101 373.6 705 71.1
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 9.9e-101 372.1 703 67.3
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 6.4e-100 369.4 668 73.5
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 1.6e-98 364.8 620 75.3
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 1.3e-97 361.7 711 70.0
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 1.8e-97 361.3 711 69.9
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 3.0e-97 360.5 669 71.6
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 6.7e-97 359.4 734 68.4
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 2.5e-96 357.5 733 64.4
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 9.6e-96 355.5 672 71.7
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.3e-95 355.1 733 68.3
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 1.3e-95 355.1 711 70.5
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.6e-95 354.8 669 72.6
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 1.6e-95 354.8 669 67.1
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 2.1e-95 354.4 735 68.4
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.4e-94 351.7 707 68.5
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 1.8e-94 351.3 669 72.3
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 5.3e-94 349.7 667 70.6
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.2e-93 348.6 624 75.0
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 1.5e-93 348.2 627 70.5
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 2.0e-93 347.8 624 75.2
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 4.5e-93 346.7 727 67.3
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 1.0e-92 345.5 716 68.6
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 1.3e-92 345.1 667 69.7
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 2.2e-92 344.4 727 67.4
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.2e-92 344.4 318 56.9
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 2.2e-92 344.4 726 61.8
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 1.1e-91 342.0 672 69.8
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 2.5e-91 340.9 679 69.7
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 7.1e-91 339.3 713 68.4
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.2e-90 338.6 727 67.4
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 4.6e-90 336.7 723 67.1
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 2.3e-89 334.3 624 73.2
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 3.9e-89 333.6 564 79.1
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 3.9e-89 333.6 718 66.6
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 6.7e-89 332.8 622 63.5
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.5e-88 331.6 721 67.8
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 7.4e-88 329.3 605 72.6
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 7.4e-88 329.3 707 68.0
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 9.7e-88 328.9 291 55.7
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.6e-87 328.2 627 74.8
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 2.8e-87 327.4 631 73.4
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.8e-87 327.4 711 66.8
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 2.8e-87 327.4 721 66.2
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 1.4e-86 325.1 721 66.3
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 9.0e-86 322.4 715 67.3
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 2.9e-84 317.4 675 67.9
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 2.9e-84 317.4 712 67.4
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 6.5e-84 316.2 726 65.0
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 6.5e-84 316.2 352 50.3
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 1.9e-83 314.7 597 73.9
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 3.2e-83 313.9 628 71.7
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 4.2e-83 313.5 625 73.8
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 4.2e-83 313.5 624 71.5
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 2.1e-82 311.2 594 73.9
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 3.6e-82 310.5 709 66.9
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 2.3e-81 307.8 709 63.2
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 3.9e-81 307.0 642 69.8
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 6.7e-81 306.2 329 50.5
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 8.8e-81 305.8 630 70.2
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 2.0e-80 304.7 711 67.1
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 7.4e-80 302.8 708 62.3
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 9.7e-80 302.4 307 53.4
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 1.7e-79 301.6 714 64.8
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 3.7e-79 300.4 707 65.6
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 3.7e-79 300.4 666 67.3
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 6.3e-79 299.7 667 66.1
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 1.8e-78 298.1 672 66.1
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.8e-78 298.1 358 47.5
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.4e-78 297.7 385 47.0
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 5.3e-78 296.6 723 64.5
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 6.9e-78 296.2 621 70.7
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 9.1e-78 295.8 625 69.0
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 9.1e-78 295.8 704 66.2
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 7.7e-77 292.7 624 64.3
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.0e-76 292.4 624 63.9
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 3.8e-76 290.4 624 64.4
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 5.0e-76 290.0 624 63.9
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 8.5e-76 289.3 625 64.0
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 1.9e-75 288.1 624 63.9
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 2.7e-74 284.3 375 46.4
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 3.6e-74 283.9 277 54.5
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 2.2e-71 274.6 502 83.5
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 1.1e-70 272.3 211 62.1
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 9.1e-70 269.2 624 69.1
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 1.7e-68 265.0 672 65.5
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.6e-66 258.5 331 43.2
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.5e-64 251.9 287 46.7
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.2e-63 248.1 265 49.8
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 7.7e-53 213.0 203 50.2
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 1.1e-51 209.1 159 64.8
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 3.4e-48 197.6 547 68.6
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 4.4e-48 197.2 140 65.0
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 5.9e-45 186.8 155 58.7
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 5.8e-32 143.7 96 69.8
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 7.3e-27 126.7 121 50.4
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 8.0e-26 123.2 210 30.5
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 2.2e-23 115.2 73 82.2
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.9e-23 114.8 73 74.0
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 3.2e-22 111.3 75 77.3
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 1.6e-21 109.0 75 73.3
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 2.7e-21 108.2 425 81.4
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 6.6e-20 103.6 198 29.3
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 4.3e-19 100.9 179 35.8
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 5.8e-16 90.5 64 75.0
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 3.6e-10 71.2 54 68.5
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 3.1e-09 68.2 48 72.9
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 4.4e-08 64.3 165 26.1
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 4.4e-08 64.3 166 26.5
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 7.6e-08 63.5 138 30.4
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 1.7e-07 62.4 178 23.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.7e-07 62.4 125 31.2
PGR004G0301 Punica granatum HOM05D000001 ORTHO05D000003 1.7e-07 62.4 117 35.0
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 2.2e-07 62.0 206 22.8
CANSAT80G2863 Cannabis sativa HOM05D000001 ORTHO05D000003 2.2e-07 62.0 210 25.2
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 2.2e-07 62.0 166 25.3
CANSAT80G2044 Cannabis sativa HOM05D000001 ORTHO05D000003 3.8e-07 61.2 210 25.2
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 3.8e-07 61.2 163 24.5
GSVIVG01010647001 Vitis vinifera HOM05D000001 ORTHO05D010013 8.4e-07 60.1 133 27.8
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 1.1e-06 59.7 120 26.7
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 1.4e-06 59.3 164 22.6
Prupe.5G218700 Prunus persica HOM05D002453 ORTHO05D008746 1.4e-06 59.3 122 26.2
MELO3C024569.2 Cucumis melo HOM05D000001 ORTHO05D009373 2.4e-06 58.5 110 33.6
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 2.4e-06 58.5 128 29.7
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 3.2e-06 58.2 147 23.8
Lsat_1_v5_gn_2_115661 Lactuca sativa HOM05D000001 ORTHO05D000003 3.2e-06 58.2 126 30.2
MD07G1078100 Malus domestica HOM05D000001 ORTHO05D009373 3.2e-06 58.2 124 27.4
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 3.2e-06 58.2 190 22.6
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 3.2e-06 58.2 185 22.2
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 4.2e-06 57.8 165 24.2
Atru.ctg752_3.82 Acer truncatum HOM05D002453 ORTHO05D008746 4.2e-06 57.8 122 27.9
Haze_09312 Corylus avellana HOM05D002453 ORTHO05D008746 4.2e-06 57.8 122 27.9
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 4.2e-06 57.8 166 26.5
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 5.4e-06 57.4 178 22.5
Lsat_1_v5_gn_6_74000 Lactuca sativa HOM05D002007 ORTHO05D000355 5.4e-06 57.4 117 29.1
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 5.4e-06 57.4 165 24.8
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 7.1e-06 57.0 165 24.8
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 7.1e-06 57.0 165 24.8
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 9.3e-06 56.6 142 27.5
BcaC01g01383 Brassica carinata HOM05D002453 ORTHO05D008746 9.3e-06 56.6 111 30.6
C03p91440 Brassica napus HOM05D002453 ORTHO05D008746 9.3e-06 56.6 111 30.6
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 9.3e-06 56.6 111 30.6
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 9.3e-06 56.6 165 25.5
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 9.3e-06 56.6 117 41.9
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 9.3e-06 56.6 165 24.8
SGA_v2.0_scaffold165G38283 Striga asiatica HOM05D000424 ORTHO05D000355 9.3e-06 56.6 104 30.8


User provided reference genes

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