Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 3030.4 1509 100.0
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 2924.8 1509 97.1
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 2121.3 1513 69.7
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1935.6 1518 64.4
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1919.1 1517 63.0
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1907.9 1509 62.7
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1894.8 1510 63.1
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1818.1 1536 58.8
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1816.2 1542 59.3
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1777.7 1460 60.3
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1770.7 1509 58.8
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1764.6 1503 59.8
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1758.0 1516 58.5
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1741.1 1505 58.3
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1731.8 1515 57.9
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1714.9 1516 56.7
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1692.2 1509 57.7
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1685.2 1508 56.8
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1680.6 1548 56.5
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1671.4 1508 57.6
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1665.6 1516 56.3
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1665.2 1512 56.4
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1664.8 1509 56.8
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1664.0 1519 56.6
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1642.9 1621 53.0
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1624.0 1512 55.3
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1623.2 1508 56.6
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1620.5 1503 55.9
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1618.6 1523 55.5
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1602.8 1506 53.6
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1599.3 1503 53.8
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1597.0 1506 53.7
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1590.5 1507 54.4
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1590.1 1512 54.3
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1590.1 1438 57.3
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1587.4 1507 53.8
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1585.9 1523 54.6
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1582.4 1506 54.2
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1581.2 1531 52.4
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1579.7 1538 52.7
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1577.4 1507 53.9
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1570.8 1508 53.3
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1570.1 1510 54.8
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1569.3 1528 53.5
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1569.3 1528 53.5
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1557.3 1516 53.4
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1557.3 1513 53.1
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1553.1 1511 53.0
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1549.6 1510 53.4
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1547.7 1501 53.4
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1547.7 1508 53.8
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1542.7 1512 52.2
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1538.9 1507 52.2
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1531.2 1507 53.8
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1522.3 1505 51.6
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1521.5 1511 51.6
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1520.4 1512 51.9
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1516.9 1505 52.2
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1507.3 1500 51.8
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1485.7 1534 50.3
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1477.6 1289 58.0
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1460.3 1514 50.9
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1458.7 1517 51.2
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1451.0 1515 51.0
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1434.5 1204 60.6
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1427.9 1462 51.2
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1424.8 1519 50.0
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1414.4 1503 49.3
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1409.4 1512 49.9
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1405.2 1516 49.8
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1404.4 1522 49.7
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1395.9 1244 57.7
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1392.9 1510 49.5
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1388.2 1513 49.4
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1385.9 1519 49.4
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1379.4 1546 48.7
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1377.5 1542 48.5
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1372.1 1521 49.4
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1360.1 1759 43.4
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1337.0 1396 50.9
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1327.0 1515 47.3
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1325.5 1529 48.3
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1303.1 1515 47.7
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1276.2 1557 45.1
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1270.8 1162 56.6
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1266.9 1051 61.8
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1264.2 1293 51.7
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1261.1 1541 45.0
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1248.8 1133 56.8
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1229.5 1101 56.7
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1159.4 1128 55.0
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1109.4 984 57.4
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.3e-301 1039.6 1137 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.7e-272 943.7 1536 38.0
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 8.2e-267 924.9 1143 43.9
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 1.1e-263 914.4 1546 36.4
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 3.0e-261 906.4 1541 36.7
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.8e-221 774.2 974 42.5
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 1.8e-218 764.2 1025 43.0
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 5.0e-216 756.1 591 64.6
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.5e-215 753.8 601 62.2
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.5e-215 753.8 1403 33.9
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 2.0e-209 734.2 573 64.6
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 8.0e-206 722.2 641 56.9
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 2.0e-196 691.0 1016 41.1
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 7.8e-193 679.1 1016 41.0
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.0e-192 678.7 1015 41.1
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.4e-181 641.7 572 56.8
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.1e-167 595.5 614 53.3
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.0e-139 500.4 578 48.6
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 5.0e-139 500.4 1038 33.5
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 5.5e-138 496.9 478 55.0
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.0e-136 491.1 580 47.8
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.8e-120 438.7 567 44.3
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 4.1e-109 401.0 532 45.1
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-108 397.9 1001 28.4
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.6e-105 389.0 504 43.7
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 7.8e-92 343.6 302 59.6
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.3e-91 342.0 318 52.8
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 8.6e-91 340.1 458 42.4
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 7.3e-82 310.5 475 38.3
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 4.7e-81 307.8 328 44.8
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.6e-79 302.0 539 32.7
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.9e-77 295.8 835 28.0
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 2.7e-76 292.0 277 51.3
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 4.6e-76 291.2 305 46.9
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 2.8e-73 282.0 415 41.7
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.8e-73 282.0 359 43.2
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 6.8e-72 277.3 456 39.5
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 1.4e-69 269.6 389 41.6
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.2e-68 266.5 250 53.2
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 3.3e-66 258.5 212 58.5
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.3e-66 258.5 217 56.2
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.6e-65 256.1 473 33.4
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 4.8e-65 254.6 194 61.3
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.9e-58 232.6 299 45.5
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 6.2e-57 227.6 300 45.0
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.9e-51 208.4 324 37.0
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 3.7e-49 201.8 391 36.3
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-45 189.9 285 40.4
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 8.7e-43 180.6 132 63.6
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 9.6e-42 177.2 198 50.0
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 9.6e-42 177.2 172 52.3
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.6e-41 176.4 183 51.4
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 2.4e-40 172.6 124 66.9
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 2.6e-39 169.1 117 62.4
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 7.6e-39 167.5 187 50.8
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.9e-37 162.9 203 42.4
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.3e-33 150.2 174 47.1
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 3.7e-33 148.7 109 67.0
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 6.9e-32 144.4 116 62.9
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 3.9e-27 128.6 147 46.3
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 3.4e-23 115.5 106 51.9
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 2.0e-18 99.8 95 55.8
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 9.7e-18 97.4 95 54.7
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 1.7e-17 96.7 676 21.2
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 3.0e-11 75.9 193 33.2
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.1e-10 73.9 61 57.4
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 3.3e-10 72.4 88 47.7
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 3.3e-10 72.4 66 51.5
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 5.3e-08 65.1 42 71.4
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 1.0e-06 60.8 38 76.3
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 2.2e-06 59.7 141 31.9


User provided reference genes

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