Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 0.0e+00 1166.0 589 100.0
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 6.7e-249 864.0 588 73.3
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 5.1e-233 811.2 603 66.8
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.1e-232 810.1 596 67.1
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 2.0e-229 799.3 601 66.6
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 7.2e-227 790.8 600 65.3
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.6e-226 789.6 595 65.5
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 1.8e-225 786.2 595 64.9
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 2.0e-224 782.7 607 63.9
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 9.7e-224 780.4 597 64.0
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 8.2e-223 777.3 588 67.5
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 7.7e-221 770.8 596 65.1
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 2.2e-220 769.2 602 64.0
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 2.2e-220 769.2 596 63.4
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.0e-220 768.1 591 63.8
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.5e-219 766.5 595 63.5
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 3.0e-217 758.8 596 63.4
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.2e-216 756.9 595 63.0
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 4.4e-216 755.0 601 62.6
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 7.5e-216 754.2 588 64.1
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 1.3e-215 753.4 594 63.1
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 8.2e-215 750.7 599 62.9
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 8.2e-215 750.7 613 61.5
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 5.3e-214 748.0 637 59.2
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.2e-213 746.9 594 62.8
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 5.9e-213 744.6 611 61.0
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 5.0e-212 741.5 586 63.5
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 8.5e-212 740.7 596 62.2
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.1e-211 740.3 600 61.3
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 1.1e-211 740.3 608 61.3
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.5e-211 739.2 597 61.1
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 4.2e-211 738.4 609 61.4
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 7.2e-211 737.6 587 62.9
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 9.4e-211 737.3 597 61.0
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 9.4e-211 737.3 586 62.5
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 1.2e-210 736.9 596 60.2
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.6e-210 736.5 587 62.2
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.1e-210 736.1 585 63.2
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 2.7e-210 735.7 595 62.4
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 3.6e-210 735.3 601 61.6
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 4.7e-210 734.9 597 60.6
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 4.7e-210 734.9 589 61.8
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 4.7e-210 734.9 585 63.1
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 6.1e-210 734.6 608 61.3
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 6.1e-210 734.6 586 61.4
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 6.1e-210 734.6 585 63.2
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 1.0e-209 733.8 584 63.5
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.4e-209 733.4 585 63.2
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 2.3e-209 732.6 600 61.7
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.3e-209 732.6 587 62.0
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 4.0e-209 731.9 589 60.8
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 4.0e-209 731.9 588 62.1
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 6.8e-209 731.1 595 62.5
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 6.8e-209 731.1 585 62.4
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 8.8e-209 730.7 619 60.6
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 1.5e-208 729.9 587 61.7
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.6e-208 729.2 588 61.7
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.3e-207 726.9 599 60.4
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 6.3e-207 724.5 593 61.6
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 1.1e-206 723.8 599 60.4
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 7.0e-206 721.1 588 60.9
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 9.1e-206 720.7 593 61.2
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 1.2e-205 720.3 564 62.2
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.6e-205 719.9 594 61.8
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.0e-204 717.2 591 60.7
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 1.0e-204 717.2 597 60.8
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 2.3e-204 716.1 593 58.9
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 5.0e-204 714.9 592 60.1
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 1.9e-203 713.0 603 59.5
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.5e-203 712.6 599 59.4
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 2.1e-202 709.5 602 60.1
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.0e-201 707.2 593 58.7
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 4.0e-201 705.3 597 59.5
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 5.7e-200 701.4 588 58.8
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 5.7e-200 701.4 596 58.4
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 1.3e-199 700.3 600 58.3
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 3.7e-199 698.7 591 59.4
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 4.9e-199 698.4 599 58.1
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 6.3e-199 698.0 580 60.2
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 1.8e-198 696.4 610 56.9
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 4.1e-198 695.3 588 58.5
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 5.4e-198 694.9 600 57.5
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.2e-197 693.7 615 58.5
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.2e-197 693.7 600 57.5
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 2.0e-197 693.0 601 57.9
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 7.8e-197 691.0 587 57.4
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 7.8e-197 691.0 553 61.8
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 7.8e-197 691.0 600 57.0
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 7.8e-197 691.0 602 58.0
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 6.6e-196 688.0 513 63.5
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.1e-195 687.2 602 58.0
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 1.9e-195 686.4 598 57.4
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 4.3e-195 685.3 597 57.3
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 6.1e-194 681.4 586 57.8
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.4e-193 680.2 593 57.7
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 5.2e-193 678.3 593 57.5
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 1.5e-192 676.8 602 56.1
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 4.4e-192 675.2 605 56.2
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 5.8e-192 674.9 595 57.6
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 2.2e-191 672.9 601 55.7
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 1.1e-190 670.6 537 61.8
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 9.2e-190 667.5 595 58.2
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.0e-189 666.4 590 58.5
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.7e-189 666.0 601 56.1
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.3e-188 663.7 591 58.0
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 2.3e-188 662.9 591 57.9
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.3e-188 662.9 591 57.9
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 4.3e-187 658.7 595 59.3
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 3.6e-186 655.6 592 57.1
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.6e-184 649.4 591 57.0
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 2.3e-180 636.3 512 63.5
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 5.0e-180 635.2 591 55.5
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 2.8e-178 629.4 587 54.2
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 4.7e-178 628.6 572 55.9
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 6.8e-177 624.8 598 54.5
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 1.3e-175 620.5 596 52.9
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 4.6e-173 612.1 578 55.7
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 9.0e-161 571.2 594 50.5
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.3e-159 567.4 599 49.6
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 2.2e-159 566.6 618 49.4
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 1.2e-157 560.8 586 51.7
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.5e-155 553.9 587 51.3
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 8.1e-146 521.5 471 56.7
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 6.4e-143 511.9 598 47.2
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.4e-137 493.4 432 57.4
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.9e-131 473.8 595 44.5
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 5.0e-119 432.6 394 56.6
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 1.8e-113 414.1 453 47.2
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 2.0e-112 410.6 316 64.6
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 1.9e-110 404.1 637 38.1
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.5e-110 402.5 326 61.7
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 2.1e-109 400.6 499 45.1
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.8e-108 397.5 358 58.1
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 1.5e-102 377.9 527 41.4
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.6e-91 340.5 354 50.8
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 9.5e-86 322.0 267 61.0
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 6.6e-79 299.3 590 33.4
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 4.0e-76 290.0 552 36.8
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 7.5e-67 259.2 184 69.0
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 6.4e-66 256.1 186 65.6
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 5.2e-60 236.5 368 43.2
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 1.7e-58 231.5 221 53.8
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.6e-56 224.9 162 63.6
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.3e-54 216.1 135 71.9
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 2.5e-38 164.5 120 64.2
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 6.9e-36 156.4 119 62.2
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 6.4e-34 149.8 182 50.5
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.7e-29 134.0 113 58.4
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 3.7e-29 134.0 113 57.5
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 2.4e-28 131.3 121 57.0
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 1.0e-26 125.9 80 70.0
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.2e-26 124.8 99 62.6
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.8e-26 124.0 99 62.6
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 4.9e-26 123.6 76 68.4
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 1.2e-24 119.0 184 39.7
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 1.1e-22 112.5 180 41.7
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 1.1e-22 112.5 83 66.3
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 1.6e-16 92.0 122 43.4
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 1.3e-13 82.4 57 64.9
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 3.1e-12 77.8 60 58.3
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 1.5e-11 75.5 126 43.7
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 9.4e-09 66.2 74 44.6
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 1.4e-07 62.4 41 65.9
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 2.5e-06 58.2 44 63.6
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 5.7e-06 57.0 44 54.5


User provided reference genes

Program Settings