Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1572.8 783 100.0
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1459.1 792 92.7
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1213.0 792 76.8
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1178.7 791 73.3
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1151.0 790 72.2
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1134.8 789 72.0
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1133.6 790 71.4
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1124.4 798 70.9
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1120.5 790 70.6
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1117.4 790 70.8
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1117.1 786 69.6
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1114.4 790 70.5
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1113.2 791 69.7
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1112.4 790 69.7
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1110.9 792 69.9
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1110.5 790 70.3
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1109.7 789 70.3
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1106.7 790 70.1
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1106.3 787 70.4
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1104.0 793 69.4
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1102.8 791 70.8
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1101.7 793 69.4
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1100.5 789 69.2
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1097.4 789 70.2
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1097.0 793 69.5
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1095.5 790 69.6
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1094.0 791 69.3
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1088.9 793 68.1
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1088.9 789 69.1
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1087.8 790 69.5
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1085.9 789 68.2
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1085.1 789 68.9
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1080.9 783 67.4
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1080.9 788 68.1
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1080.5 790 68.6
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1079.7 789 67.3
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1078.9 795 66.9
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1077.8 848 65.7
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1077.0 795 66.9
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1076.6 790 68.4
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1075.8 773 69.6
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1075.1 787 67.2
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 5.4e-312 1074.3 879 63.5
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 5.4e-312 1073.9 790 68.2
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 1.1e-311 1073.2 794 68.0
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 1.6e-311 1072.4 792 67.6
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 3.8e-308 1061.2 790 67.0
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 6.5e-308 1060.4 809 66.9
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 6.5e-308 1060.4 794 67.3
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.9e-307 1058.9 790 67.2
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.9e-307 1058.9 809 66.7
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 7.2e-307 1057.0 789 66.9
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 9.3e-307 1056.6 788 66.9
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 9.3e-307 1056.6 788 66.9
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 6.1e-306 1053.9 777 68.1
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 6.7e-305 1050.4 797 66.2
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 5.7e-304 1047.3 790 66.5
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 5.7e-304 1047.3 788 67.0
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 1.3e-303 1046.2 784 66.7
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 1.6e-303 1045.8 778 67.0
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 2.2e-303 1045.4 788 66.0
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 6.3e-303 1043.9 791 66.4
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 2.4e-302 1042.0 790 66.1
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 7.7e-301 1036.9 790 66.5
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 2.9e-300 1035.0 794 65.7
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 8.5e-300 1033.5 787 64.7
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 1.4e-299 1032.7 791 64.9
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 1.9e-299 1032.3 784 65.6
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 2.7e-298 1028.5 788 66.1
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 1.8e-297 1025.8 787 64.7
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 3.0e-297 1025.0 790 65.6
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 1.1e-296 1023.1 791 65.0
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 3.3e-296 1021.5 787 64.9
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 5.7e-296 1020.8 774 67.4
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 2.8e-295 1018.5 789 65.4
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 3.7e-295 1018.1 790 64.3
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 6.3e-295 1017.3 789 65.3
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 9.1e-294 1013.4 786 64.8
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 7.7e-293 1010.4 790 64.2
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 3.2e-291 1005.0 796 63.6
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 3.9e-289 998.0 830 62.2
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 1.1e-288 996.5 774 64.5
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 4.4e-288 994.6 789 63.5
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 8.2e-287 990.3 785 64.1
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 1.8e-286 989.2 999 53.6
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 3.1e-286 988.4 695 71.9
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 5.5e-283 977.6 790 61.1
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.8e-273 946.0 803 61.9
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 2.0e-256 889.4 787 58.1
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 7.1e-238 827.8 585 70.8
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 3.0e-236 822.4 581 69.9
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 2.1e-234 816.2 575 68.9
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 2.8e-226 789.3 802 53.0
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.8e-218 762.7 697 58.1
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 2.9e-215 752.7 534 70.6
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 2.6e-208 729.6 790 48.7
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 2.9e-199 699.5 524 67.2
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 2.1e-197 693.3 639 58.8
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 1.5e-195 687.2 807 47.5
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 2.2e-186 656.8 792 48.9
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 8.8e-172 608.2 429 70.2
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 1.4e-161 574.3 401 71.8
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 1.6e-149 534.3 612 49.5
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.1e-149 533.9 406 66.5
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 2.2e-130 470.7 366 64.2
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 5.8e-115 419.5 393 55.2
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 4.4e-107 393.3 253 71.1
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 6.4e-106 389.4 251 72.9
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 2.1e-96 357.8 319 57.7
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 6.9e-84 316.2 808 30.1
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.2e-80 305.4 215 64.7
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.6e-80 305.1 199 65.8
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 5.1e-79 300.1 182 73.1
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.5e-78 298.5 182 69.8
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 5.7e-78 296.6 182 72.0
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 1.3e-77 295.4 201 67.7
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 4.8e-77 293.5 180 68.9
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 3.1e-76 290.8 230 60.4
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 6.9e-76 289.7 185 70.3
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 6.9e-76 289.7 181 70.2
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 7.6e-75 286.2 182 69.8
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 3.2e-73 280.8 182 69.2
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.7e-72 277.7 182 68.1
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 5.7e-70 270.0 188 63.3
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 5.7e-70 270.0 287 48.8
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 1.0e-66 259.2 182 70.9
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 6.7e-63 246.5 207 60.4
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 1.5e-62 245.4 192 58.3
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.4e-60 238.0 182 59.3
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 2.7e-56 224.6 206 58.7
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 6.7e-47 193.4 158 60.8
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 2.9e-42 177.9 157 60.5
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 1.6e-40 172.2 181 56.4
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 8.8e-39 166.4 180 53.9
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 9.1e-36 156.4 110 70.0
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 1.5e-33 149.1 106 70.8
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 3.6e-32 144.4 85 74.1
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 1.5e-30 139.0 141 52.5
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 2.0e-30 138.7 141 51.8
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 5.7e-30 137.1 97 69.1
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 6.3e-29 133.7 83 74.7
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.0e-26 126.3 89 62.9
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 1.0e-18 99.8 62 79.0
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 5.0e-18 97.4 89 51.7
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 6.6e-18 97.1 83 55.4
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 1.5e-17 95.9 85 54.1
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 2.5e-17 95.1 53 81.1
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 3.6e-16 91.3 58 65.5
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 2.3e-15 88.6 56 69.6
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 1.9e-12 79.0 44 77.3
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 5.4e-12 77.4 76 55.3
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 9.2e-12 76.6 48 79.2
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 6.6e-10 70.5 41 78.0
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 5.6e-09 67.4 62 58.1
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 4.7e-08 64.3 36 75.0
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 4.0e-07 61.2 49 65.3
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 4.0e-07 61.2 41 65.9
CDE05G2763 Ceratophyllum demersum HOM05D004198 ORTHO05D130465 8.9e-07 60.1 82 37.8
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 9.9e-06 56.6 57 50.9


User provided reference genes

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