Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 5204.8 2685 100.0
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 5049.2 2679 97.3
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2674.8 2735 54.7
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 2287.7 2728 49.4
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2251.9 2677 48.8
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2246.1 2679 48.8
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 2204.5 2461 51.2
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2101.2 2689 46.1
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2099.7 2669 45.6
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 2068.5 2778 45.5
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2038.1 2690 44.8
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1964.9 2680 43.6
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1957.2 2781 43.3
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1944.9 2711 43.2
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1927.9 2676 43.2
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1923.7 2735 43.0
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1923.3 2688 43.2
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1919.4 2661 44.0
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1919.1 2653 43.5
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1918.7 2654 43.6
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1918.3 2681 42.9
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1897.9 2672 42.9
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1891.3 2772 42.9
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1885.5 2659 43.3
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1878.2 2668 42.3
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1872.1 2640 42.4
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1801.2 2665 41.6
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1782.3 2305 44.6
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1776.1 2648 42.4
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1770.0 2648 41.2
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1766.5 2644 41.0
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1754.6 2649 41.2
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1737.2 2658 40.4
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1728.4 2658 39.7
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1726.8 2655 41.2
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1723.0 2651 40.7
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1680.6 2669 39.8
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1676.4 2661 39.8
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1674.8 2658 39.8
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1654.0 2641 39.5
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1652.1 2678 38.3
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1642.1 2664 39.4
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1640.9 2658 40.1
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1638.6 2663 38.6
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1635.9 2708 38.8
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1634.4 2688 38.7
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1630.9 2817 38.5
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1630.9 2661 39.0
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1628.2 2719 38.7
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1626.7 2654 39.5
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1620.9 2657 38.2
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1619.0 2625 38.7
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1616.7 2653 39.1
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1615.9 2697 39.5
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1608.2 2619 39.8
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1600.9 2706 38.6
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1594.3 2641 39.2
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1587.8 2647 39.1
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1586.6 2588 39.3
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1576.6 2642 38.8
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1573.9 2660 38.1
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1572.8 2670 38.6
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1571.6 2643 38.5
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1568.1 2646 38.7
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1546.2 2660 38.2
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1541.2 2364 40.6
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1538.9 2699 38.2
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1530.8 2587 38.7
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1504.6 2686 37.3
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1490.3 1818 46.4
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1471.8 2641 37.4
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1471.1 2756 36.7
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1435.2 2617 37.1
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1431.8 2380 39.1
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1410.2 2697 36.4
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1397.1 2729 36.0
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1394.8 2662 36.5
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1393.6 2692 36.1
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1392.9 2589 37.0
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1382.5 2723 36.0
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1352.0 2500 35.8
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1349.0 2194 39.0
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1347.8 2072 40.1
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1323.1 2703 34.9
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1291.6 2325 37.2
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1253.0 2676 34.5
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1239.2 2670 34.2
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1208.4 2042 37.9
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1179.5 2663 33.3
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1167.5 2289 34.9
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1149.0 2070 36.3
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1139.4 1779 39.9
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 1.8e-309 1067.4 2156 35.2
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 6.0e-305 1052.4 2272 33.6
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.3e-304 1051.2 1837 38.7
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 6.1e-297 1025.8 1720 38.0
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 1.1e-269 935.3 2560 30.9
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 2.8e-217 761.1 788 53.0
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 2.9e-214 751.1 2800 26.8
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 3.9e-211 740.7 2629 27.8
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 9.6e-210 736.1 2778 26.7
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.6e-196 692.2 943 45.8
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.1e-184 651.4 1185 39.5
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.4e-181 642.5 2502 27.1
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.6e-177 629.0 1251 34.3
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 2.2e-177 628.6 2776 25.1
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 5.9e-167 594.0 612 53.8
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.1e-160 571.6 776 44.6
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.4e-155 556.2 643 49.8
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.5e-154 552.7 838 40.9
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 3.0e-147 528.5 1161 33.5
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.3e-134 486.5 622 45.0
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 7.5e-130 470.7 753 39.0
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.8e-123 449.5 969 35.2
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 9.2e-120 437.2 1165 31.3
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 6.4e-113 414.5 741 38.3
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.2e-103 383.6 935 30.5
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 3.3e-101 375.6 565 43.0
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 6.4e-97 361.3 553 41.0
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 5.1e-94 351.7 667 37.9
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 1.9e-93 349.7 2932 22.2
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 4.3e-93 348.6 429 49.4
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 2.4e-80 306.2 331 52.9
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 1.2e-79 303.9 353 50.7
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.4e-75 289.7 474 40.7
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.2e-71 277.3 484 36.4
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 6.1e-63 248.4 397 40.6
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.5e-50 207.2 494 30.4
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 5.5e-48 198.7 149 74.5
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.0e-45 190.3 338 36.7
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 2.2e-44 186.8 199 54.3
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 2.0e-42 180.3 252 41.3
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.9e-40 173.7 371 34.2
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 4.0e-38 166.0 345 33.0
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.2e-37 164.5 220 44.1
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 9.7e-37 161.4 185 50.8
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 5.3e-35 155.6 149 56.4
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 1.1e-32 147.9 235 39.6
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.3e-30 140.2 354 32.5
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.5e-29 137.5 227 37.9
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 3.8e-25 122.9 140 47.9
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.6e-23 116.3 255 30.2
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 2.0e-21 110.5 253 35.2
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 2.0e-21 110.5 95 56.8
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 9.8e-21 108.2 127 44.1
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 4.1e-19 102.8 366 29.2
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 3.5e-18 99.8 216 35.6
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.0e-17 98.2 580 22.6
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.8e-17 96.3 135 40.7
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.5e-16 94.4 154 37.7
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 2.5e-16 93.6 110 43.6
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 3.6e-15 89.7 81 56.8
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.7e-15 89.4 410 22.9
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.0e-14 88.2 357 24.6
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.0e-14 88.2 357 24.6
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 2.9e-12 80.1 81 55.6
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.9e-11 77.4 107 33.6
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 2.4e-11 77.0 97 46.4
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 3.2e-11 76.6 93 41.9
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 2.7e-10 73.6 78 52.6
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 7.8e-10 72.0 79 51.9
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.3e-09 71.2 141 31.2
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 1.7e-09 70.9 94 38.3
SEGI_13878 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.3e-09 70.5 155 32.3
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 5.0e-09 69.3 66 45.5
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 7.3e-08 65.5 160 37.5
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 4.7e-07 62.8 66 53.0
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 1.4e-06 61.2 116 31.9
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 4.0e-06 59.7 68 44.1
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 6.8e-06 58.9 55 50.9


User provided reference genes

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