Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G6670 Papaver somniferum HOM05D003534 ORTHO05D304647 6.0e-95 350.9 186 100.0
PSO675G9373 Papaver somniferum HOM05D003534 ORTHO05D004911 3.3e-53 212.2 255 54.1
PSO541G3604 Papaver somniferum HOM05D003534 ORTHO05D004911 2.4e-35 152.9 267 42.7
PSO675G2831 Papaver somniferum HOM05D003534 ORTHO05D004911 2.4e-35 152.9 267 42.7
Gohir.A03G195500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 1.4e-22 110.5 261 36.4
Gorai.005G244600 Gossypium raimondii HOM05D003534 ORTHO05D004911 1.8e-22 110.2 261 36.4
Gohir.D02G216500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 5.2e-22 108.6 261 36.4
CiPaw.05G066400 Carya illinoinensis HOM05D003534 ORTHO05D004911 8.9e-22 107.8 247 36.8
Thecc.02G083000 Theobroma cacao HOM05D003534 ORTHO05D004911 2.6e-21 106.3 241 35.7
Sed0008343 Sechium edule HOM05D003534 ORTHO05D004911 1.4e-19 100.5 257 34.2
TAR376G0939 Trochodendron aralioides HOM05D003534 ORTHO05D004911 5.4e-19 98.6 265 33.6
PGR142G3854 Punica granatum HOM05D003534 ORTHO05D004911 1.6e-18 97.1 267 34.5
Duzib132G0318 Durio zibethinus HOM05D003534 ORTHO05D004911 5.9e-18 95.1 171 39.2
Dinv23505 Davidia involucrata HOM05D003534 ORTHO05D004911 7.8e-18 94.7 244 35.7
Lalb_Chr01g0002481 Lupinus albus HOM05D003534 ORTHO05D004911 1.3e-17 94.0 248 35.1
Nn8g40768 Nelumbo nucifera HOM05D003534 ORTHO05D004911 2.3e-17 93.2 263 36.1
MBI16_g05475_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D004911 8.6e-17 91.3 258 34.1
Aqoxy3G00729 Aquilegia oxysepala HOM05D003534 ORTHO05D004911 1.5e-16 90.5 252 33.3
Cfa004983 Carpinus fangiana HOM05D003534 ORTHO05D004911 2.5e-16 89.7 225 34.7
QL11p044502 Quercus lobata HOM05D003534 ORTHO05D004911 5.6e-16 88.6 229 34.5
Cpa.g.sc62.164 Carica papaya HOM05D003534 ORTHO05D004911 7.3e-16 88.2 269 32.3
MD10G1073000 Malus domestica HOM05D003534 ORTHO05D004911 7.3e-16 88.2 250 32.0
Nn3g20273 Nelumbo nucifera HOM05D003534 ORTHO05D004911 1.2e-15 87.4 255 33.7
MELO3C023306.2 Cucumis melo HOM05D003534 ORTHO05D004911 1.6e-15 87.0 248 32.7
CsaV3_2G014840 Cucumis sativus L. HOM05D003534 ORTHO05D004911 1.6e-15 87.0 248 33.1
Glyma.12G042600 Glycine max HOM05D003534 ORTHO05D004911 1.6e-15 87.0 238 32.4
SalBow3G2606 Salvia bowleyana HOM05D003534 ORTHO05D004911 2.1e-15 86.7 239 33.1
arahy.Tifrunner.gnm1.ann1.32LR34 Arachis hypogaea HOM05D003534 ORTHO05D004911 2.8e-15 86.3 258 32.9
Eucgr.I01280 Eucalyptus grandis HOM05D003534 ORTHO05D004911 2.8e-15 86.3 244 30.7
THA.LOC104807735 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 2.8e-15 86.3 258 32.2
TWI79G0037 Tripterygium wilfordii HOM05D003534 ORTHO05D004911 2.8e-15 86.3 216 34.3
Glyma.11G116800 Glycine max HOM05D003534 ORTHO05D004911 4.7e-15 85.5 236 33.5
VMungo1127G1107 Vigna mungo HOM05D003534 ORTHO05D004911 8.0e-15 84.7 241 33.2
BcaC07g38209 Brassica carinata HOM05D003534 ORTHO05D004911 1.0e-14 84.3 250 33.2
BolC8t48630H Brassica oleracea HOM05D003534 ORTHO05D004911 1.0e-14 84.3 250 33.2
TPR.G22546 Trifolium pratense HOM05D003534 ORTHO05D004911 1.4e-14 84.0 244 31.6
Aa31sc389G50 Aethionema arabicum HOM05D003534 ORTHO05D004911 1.8e-14 83.6 245 31.8
C07p54510 Brassica napus HOM05D003534 ORTHO05D004911 1.8e-14 83.6 244 32.0
ClCG11G004310 Citrullus lanatus HOM05D003534 ORTHO05D004911 1.8e-14 83.6 288 29.5
Thhalv10024417m.g Eutrema salsugineum HOM05D003534 ORTHO05D004911 1.8e-14 83.6 254 34.3
Lalb_Chr03g0025601 Lupinus albus HOM05D003534 ORTHO05D004911 1.8e-14 83.6 240 33.8
Potri.009G118400 Populus trichocarpa HOM05D003534 ORTHO05D004911 1.8e-14 83.6 251 32.7
Prupe.8G094400 Prunus persica HOM05D003534 ORTHO05D004911 1.8e-14 83.6 251 31.1
vmacro02092 Vaccinium macrocarpon HOM05D003534 ORTHO05D004911 2.3e-14 83.2 238 33.6
BraA03t14692Z Brassica rapa HOM05D003534 ORTHO05D004911 4.0e-14 82.4 221 32.6
CARHR233180 Cardamine hirsuta HOM05D003534 ORTHO05D004911 5.2e-14 82.0 241 29.9
FAN15G3506 Fragaria x ananassa HOM05D003534 ORTHO05D004911 5.2e-14 82.0 283 31.1
Sabra09G0090700 Salix brachista HOM05D003534 ORTHO05D004911 6.8e-14 81.6 248 31.9
Ciclev10027844m.g Citrus clementina HOM05D003534 ORTHO05D004911 8.9e-14 81.3 245 30.2
CANSAT01G2206 Cannabis sativa HOM05D003534 ORTHO05D004911 1.2e-13 80.9 232 32.8
FvH4_2g09160 Fragaria vesca HOM05D003534 ORTHO05D004911 1.2e-13 80.9 283 30.7
FAN24G0084 Fragaria x ananassa HOM05D003534 ORTHO05D004911 1.2e-13 80.9 283 30.7
MD05G1064300 Malus domestica HOM05D003534 ORTHO05D004911 1.2e-13 80.9 252 32.9
Sp7g23760 Schrenkiella parvula HOM05D003534 ORTHO05D004911 1.2e-13 80.9 226 33.6
Phvul.011G044300 Phaseolus vulgaris HOM05D003534 ORTHO05D004911 1.5e-13 80.5 243 32.5
Lj5A195T78 Lonicera japonica HOM05D003534 ORTHO05D004911 2.0e-13 80.1 257 31.9
A03p56220 Brassica napus HOM05D003534 ORTHO05D004911 2.6e-13 79.7 220 31.8
RcHm_v2.0_Chr6g0265021 Rosa chinensis HOM05D003534 ORTHO05D004911 2.6e-13 79.7 254 31.1
BcaC06g32787 Brassica carinata HOM05D003534 ORTHO05D004911 3.4e-13 79.3 247 30.0
Cc02_g17370 Coffea canephora HOM05D003534 ORTHO05D004911 4.4e-13 79.0 231 32.0
Psat7g184360 Pisum sativum HOM05D003534 ORTHO05D004911 4.4e-13 79.0 246 30.9
AL7G27310 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 5.8e-13 78.6 250 31.6
Medtr4g078640 Medicago truncatula HOM05D003534 ORTHO05D004911 5.8e-13 78.6 243 31.3
C08p09620 Brassica napus HOM05D003534 ORTHO05D004911 7.5e-13 78.2 250 31.6
BolC7t45937H Brassica oleracea HOM05D003534 ORTHO05D004911 7.5e-13 78.2 220 31.8
Carub.0007s1523 Capsella rubella HOM05D003534 ORTHO05D004911 7.5e-13 78.2 271 29.5
Lj3g0020150 Lotus japonicus HOM05D003534 ORTHO05D004911 7.5e-13 78.2 240 32.5
Rhsim11G0178800 Rhododendron simsii HOM05D003534 ORTHO05D004911 7.5e-13 78.2 239 32.2
BraA08t34053Z Brassica rapa HOM05D003534 ORTHO05D004911 1.3e-12 77.4 236 32.2
Sc22g0003200 Simmondsia chinensis HOM05D003534 ORTHO05D004911 1.3e-12 77.4 268 30.2
FAN20G2815 Fragaria x ananassa HOM05D003534 ORTHO05D004911 1.7e-12 77.0 282 30.5
FAN27G1894 Fragaria x ananassa HOM05D003534 ORTHO05D004911 1.7e-12 77.0 283 30.0
AT4G25730 Arabidopsis thaliana HOM05D003534 ORTHO05D004911 1.1e-11 74.3 250 31.2
Ca_20885_v3 Cicer arietinum L. HOM05D003534 ORTHO05D004911 1.4e-11 73.9 271 29.5
Actinidia00534 Actinidia chinensis HOM05D003534 ORTHO05D004911 2.4e-11 73.2 262 31.3
ATR0568G003 Amborella trichopoda HOM05D003534 ORTHO05D004911 3.2e-11 72.8 246 31.7
SGA_v2.0_scaffold58G20518 Striga asiatica HOM05D003534 ORTHO05D004911 3.2e-11 72.8 246 30.1
arahy.Tifrunner.gnm1.ann1.HU7T3D Arachis hypogaea HOM05D003534 ORTHO05D004911 4.1e-11 72.4 289 28.7
Manes.04G089300 Manihot esculenta HOM05D003534 ORTHO05D004911 4.1e-11 72.4 234 29.1
CSS0034094 Camellia sinensis var. sinensis HOM05D003534 ORTHO05D004911 5.4e-11 72.0 248 33.9
AL6G48970 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 7.0e-11 71.6 241 31.1
Hund20114 Selenicereus undatus HOM05D003534 ORTHO05D004911 9.2e-11 71.2 215 31.6
COL.COLO4_25955 Corchorus olitorius HOM05D003534 ORTHO05D015840 1.6e-10 70.5 87 42.5
Oeu011084.1 Olea europaea HOM05D003534 ORTHO05D004911 2.0e-10 70.1 233 32.2
Haze_02400 Corylus avellana HOM05D003534 ORTHO05D004911 2.7e-10 69.7 114 41.2
EL10Ac2g03296 Beta vulgaris HOM05D003534 ORTHO05D004911 3.5e-10 69.3 239 28.9
THA.LOC104804130 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 6.0e-10 68.6 96 44.8
Hma1.2p1_0617F.1_g190140 Hydrangea macrophylla HOM05D003534 ORTHO05D004911 1.3e-09 67.4 285 28.4
GSVIVG01023801001 Vitis vinifera HOM05D003534 ORTHO05D004911 1.3e-09 67.4 196 32.1
HPP92_017536 Vanilla planifolia HOM05D003534 ORTHO05D004911 2.3e-09 66.6 243 29.2
Carub.0006s3329 Capsella rubella HOM05D003534 ORTHO05D004911 3.9e-09 65.9 190 32.6
DCAR_001567 Daucus carota HOM05D003534 ORTHO05D004911 5.0e-09 65.5 249 28.9
ATR0579G045 Amborella trichopoda HOM05D003534 ORTHO05D004911 6.6e-09 65.1 136 41.9
Lj4C693T2 Lonicera japonica HOM05D003534 ORTHO05D004911 1.5e-08 63.9 218 30.3
Cpa.g.c31087 Carica papaya HOM05D003534 ORTHO05D004911 2.5e-08 63.2 118 44.9
Medtr4g070380 Medicago truncatula HOM05D003534 ORTHO05D004911 4.3e-08 62.4 233 29.6
COL.COLO4_25956 Corchorus olitorius HOM05D003534 ORTHO05D004911 5.6e-08 62.0 78 50.0
ECA234G0458 Erigeron canadensis HOM05D003534 ORTHO05D004911 7.3e-08 61.6 228 30.7
Atru.chr5.3043 Acer truncatum HOM05D003534 ORTHO05D004911 1.2e-07 60.8 95 37.9
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 6.2e-07 58.5 269 29.4
AUR62038347 Chenopodium quinoa HOM05D003534 ORTHO05D004911 1.1e-06 57.8 220 28.2
Nitab4.5_0007066g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.1e-06 57.8 262 29.0
CDE06G2567 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 1.8e-06 57.0 233 28.3
CDE08G0557 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 1.8e-06 57.0 258 27.5
SEGI_39659 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 1.8e-06 57.0 245 28.6
CAN.G259.5 Capsicum annuum HOM05D003534 ORTHO05D004911 2.3e-06 56.6 247 26.7
Atru.chr5.3044 Acer truncatum HOM05D003534 ORTHO05D004911 3.1e-06 56.2 108 43.5
MSTRG.27693 Avicennia marina HOM05D003534 ORTHO05D004911 6.8e-06 55.1 239 28.5
AUR62041501 Chenopodium quinoa HOM05D003534 ORTHO05D004911 6.8e-06 55.1 121 32.2
Solyc11g020820.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 6.8e-06 55.1 91 39.6
CANSAT35G1090 Cannabis sativa HOM05D003534 ORTHO05D004911 8.9e-06 54.7 222 28.8


User provided reference genes

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