Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 2359.3 1177 100.0
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 2306.6 1185 97.3
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1614.7 1178 68.5
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1530.4 1190 65.2
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1459.9 1182 62.4
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1415.2 1221 60.5
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1406.3 1181 61.6
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1395.2 1176 59.5
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1394.4 1159 61.5
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1378.6 1181 58.6
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1370.5 1178 59.3
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1367.8 1175 59.3
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1367.4 1188 59.3
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1343.6 1398 51.8
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1341.3 1178 58.1
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1340.9 1180 58.6
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1338.2 1184 58.6
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1331.6 1179 57.5
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1320.4 1179 57.7
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1313.5 1178 56.2
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1305.4 1181 58.3
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1305.0 1131 59.9
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1303.5 1188 54.8
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1302.0 1181 56.2
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1301.6 1192 56.0
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1299.6 1176 56.5
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1296.6 1183 55.6
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1293.9 1182 56.3
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1287.3 1170 55.5
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1283.5 1182 56.8
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1281.2 1170 55.0
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1280.0 1176 55.5
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1278.8 1182 56.9
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1278.5 1180 56.0
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1278.1 1182 56.9
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1276.5 1217 52.7
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1276.2 1182 56.6
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1273.5 1182 56.3
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1271.9 1178 54.9
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1268.1 1173 55.2
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1250.3 1169 54.2
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1250.0 1179 54.2
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1247.3 1390 49.4
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1246.1 1186 54.9
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1245.3 1191 54.7
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1240.7 1182 55.5
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1239.9 1184 53.0
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1239.2 1180 53.6
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1238.0 1168 54.2
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1235.7 1215 53.9
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1234.2 1178 54.5
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1231.1 1176 53.8
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1228.0 1168 53.6
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1222.2 1168 53.5
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1221.5 1177 54.4
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1218.0 1176 53.8
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1209.9 1169 54.1
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1209.1 1186 52.5
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1208.7 1185 52.4
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1206.4 1188 53.5
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1206.0 1170 54.0
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1205.3 1169 54.1
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1202.6 1170 53.7
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1202.2 1168 54.0
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1192.6 1177 53.6
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1191.4 1174 53.7
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1190.3 1178 52.7
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1182.9 1129 54.1
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1181.4 1034 58.4
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1178.7 1170 53.0
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1176.8 1169 52.9
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1167.1 1051 55.9
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1166.8 1170 51.9
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1162.5 1168 52.1
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1156.7 1175 50.4
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 0.0e+00 1152.9 1110 54.4
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1152.1 1177 52.3
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 0.0e+00 1137.5 1183 50.2
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1136.3 1063 54.9
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 0.0e+00 1130.9 1184 50.0
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1094.7 1170 49.7
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 1.8e-309 1066.2 1110 50.6
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 5.3e-306 1054.7 1212 47.5
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 1.4e-301 1040.0 1179 46.9
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 2.7e-294 1015.8 1153 48.1
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.7e-280 969.9 1115 49.1
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 2.8e-270 936.0 842 57.7
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 4.3e-263 912.1 774 61.0
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 7.6e-228 795.0 790 53.4
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 2.5e-218 763.5 1104 40.5
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.0e-216 758.1 714 55.5
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.8e-205 720.7 759 49.8
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 1.2e-188 664.8 1212 36.0
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 2.3e-176 624.0 1188 35.1
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 1.2e-172 611.7 577 54.4
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 1.8e-152 544.7 443 61.6
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.5e-151 541.6 615 48.3
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 6.0e-140 503.1 463 56.2
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.4e-128 464.5 1110 31.7
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 1.7e-123 448.4 385 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 2.2e-118 431.4 792 35.6
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.4e-104 385.6 404 51.0
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 3.1e-96 357.8 523 37.9
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.1e-90 339.3 423 43.7
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.6e-84 318.9 223 70.4
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 2.7e-84 318.2 301 54.5
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 5.7e-66 257.3 204 61.3
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 1.3e-65 256.1 186 67.2
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-65 255.4 1115 26.3
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 5.7e-58 230.7 345 41.4
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 8.3e-57 226.9 176 65.9
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 5.8e-42 177.6 221 43.9
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 4.7e-36 157.9 121 62.8
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 8.3e-33 147.1 331 30.5
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 6.2e-28 131.0 151 41.7
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 2.8e-20 105.5 481 24.7
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 1.9e-16 92.8 100 51.0
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 2.7e-15 89.0 60 61.7
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 1.7e-14 86.3 58 65.5
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 3.9e-14 85.1 357 24.6
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 8.1e-12 77.4 53 64.2
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 5.8e-10 71.2 116 39.7
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 5.8e-10 71.2 55 56.4
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 2.2e-09 69.3 53 62.3
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 3.2e-08 65.5 46 63.0
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 7.1e-08 64.3 68 52.9
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 7.1e-08 64.3 46 63.0


User provided reference genes

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