Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 3.4e-225 784.6 389 100.0
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 1.5e-204 716.1 389 91.3
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 4.4e-164 581.6 409 70.7
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 4.7e-158 561.6 390 69.5
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 5.2e-157 558.1 375 72.0
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 5.2e-157 558.1 387 70.3
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 7.0e-154 547.7 386 69.2
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 9.1e-154 547.4 387 68.0
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.0e-153 546.2 383 69.7
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 3.5e-153 545.4 391 68.5
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 2.3e-149 532.7 381 66.7
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 4.0e-149 531.9 391 68.3
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 3.7e-147 525.4 391 67.3
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 3.7e-147 525.4 400 64.8
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 6.3e-147 524.6 392 65.8
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 2.4e-146 522.7 397 65.2
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 1.6e-145 520.0 391 65.0
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 2.0e-145 519.6 388 66.0
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 2.7e-145 519.2 396 65.7
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 3.5e-145 518.8 403 65.0
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 7.8e-145 517.7 388 66.0
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.0e-144 517.3 391 66.2
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 1.3e-144 516.9 385 65.5
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 2.9e-144 515.8 379 64.9
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 1.5e-143 513.5 383 67.4
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 1.5e-143 513.5 386 64.8
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 1.9e-143 513.1 379 65.4
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 3.3e-143 512.3 385 64.9
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 3.3e-143 512.3 379 65.4
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 7.3e-143 511.1 398 63.1
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 7.3e-143 511.1 374 68.7
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 1.2e-142 510.4 388 64.4
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 1.6e-142 510.0 380 66.1
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 4.7e-142 508.4 389 64.0
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 6.1e-142 508.1 381 66.1
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 3.1e-141 505.8 472 55.1
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 5.2e-141 505.0 388 64.2
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 6.8e-141 504.6 463 58.3
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 2.0e-140 503.1 387 64.6
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 2.0e-140 503.1 390 62.3
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 5.8e-140 501.5 385 62.9
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 9.8e-140 500.7 415 61.9
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 3.7e-139 498.8 377 65.3
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 4.9e-139 498.4 377 65.0
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 4.9e-139 498.4 419 59.9
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 6.4e-139 498.0 384 62.5
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 1.9e-138 496.5 381 64.0
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 1.9e-138 496.5 390 61.0
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 4.1e-138 495.4 380 62.1
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 4.1e-138 495.4 418 60.8
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 5.4e-138 495.0 390 61.5
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 9.2e-138 494.2 384 61.5
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.2e-137 493.8 394 62.7
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 2.7e-137 492.7 386 62.4
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 6.0e-137 491.5 394 63.5
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 1.3e-136 490.3 384 60.9
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.3e-136 490.3 364 67.0
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 1.3e-136 490.3 387 61.5
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 1.7e-136 490.0 381 62.5
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 1.5e-135 486.9 384 60.4
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 5.6e-135 485.0 391 61.9
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 7.3e-135 484.6 380 62.9
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 9.5e-135 484.2 427 58.3
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 1.6e-134 483.4 384 59.6
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 3.6e-134 482.3 404 60.6
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 3.6e-134 482.3 386 60.1
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 4.7e-134 481.9 386 59.8
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 1.4e-133 480.3 352 67.3
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 5.2e-133 478.4 423 58.4
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 8.9e-133 477.6 387 59.4
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 8.9e-133 477.6 387 59.4
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 7.1e-130 468.0 380 61.6
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 4.6e-129 465.3 388 62.1
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 6.0e-129 464.9 498 50.8
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 1.9e-127 459.9 366 61.2
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 8.1e-126 454.5 393 55.2
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 2.6e-124 449.5 380 59.5
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 4.4e-124 448.7 382 58.9
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 7.8e-121 438.0 383 55.1
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 3.0e-120 436.0 383 56.1
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 3.6e-118 429.1 385 54.5
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 1.4e-117 427.2 399 54.1
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 4.4e-116 422.2 379 57.8
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 7.1e-114 414.8 384 57.3
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 3.5e-113 412.5 306 66.7
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.7e-104 383.6 509 44.6
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.4e-101 374.0 275 67.6
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 1.5e-100 370.5 329 56.5
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 3.4e-92 342.8 217 74.2
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 3.4e-92 342.8 417 47.7
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 1.0e-83 314.7 390 45.6
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 1.1e-82 311.2 383 43.1
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 2.2e-78 297.0 293 52.9
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 1.1e-77 294.7 215 66.0
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 9.0e-77 291.6 379 40.9
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 1.1e-74 284.6 169 74.6
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 6.1e-73 278.9 168 74.4
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 3.3e-71 273.1 371 45.0
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 3.7e-70 269.6 233 57.9
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 1.0e-67 261.5 411 42.8
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 1.3e-67 261.2 234 57.3
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 3.3e-63 246.5 149 73.2
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 2.4e-61 240.4 260 50.8
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 1.7e-59 234.2 141 73.8
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 1.6e-57 227.6 379 40.4
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 1.3e-51 208.0 379 37.7
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 3.2e-50 203.4 561 27.6
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 1.2e-49 201.4 138 68.8
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 4.7e-49 199.5 127 70.1
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 4.7e-49 199.5 121 76.0
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.4e-45 188.0 114 75.4
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 3.1e-45 186.8 232 42.7
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 1.3e-43 181.4 150 56.0
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 9.8e-39 165.2 271 37.6
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.7e-38 164.5 241 41.9
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 4.9e-38 162.9 98 70.4
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 1.7e-35 154.5 179 48.6
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 5.0e-35 152.9 451 28.2
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 1.4e-29 134.8 78 75.6
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 8.6e-27 125.6 180 42.8
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 9.5e-26 122.1 227 36.6
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 9.5e-26 122.1 227 36.6
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.3e-22 111.7 373 29.0
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 1.7e-22 111.3 448 25.4
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 5.0e-19 99.8 423 25.8
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 6.6e-19 99.4 188 39.4
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 1.9e-18 97.8 83 56.6
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.8e-17 94.0 53 81.1
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 1.4e-16 91.7 53 79.2
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 2.0e-15 87.8 60 56.7
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 1.9e-10 71.2 57 56.1
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 2.0e-07 61.2 52 55.8
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 7.6e-07 59.3 37 75.7
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 1.3e-06 58.5 38 52.6
PGR044G0509 Punica granatum HOM05D000836 ORTHO05D000709 1.7e-06 58.2 93 35.5
Cre10.g460100 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D017828 6.4e-06 56.2 89 34.8
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 8.4e-06 55.8 27 77.8


User provided reference genes

Program Settings