Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 1.0e-162 576.6 290 100.0
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 2.2e-160 568.9 290 98.6
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 4.3e-148 528.1 290 90.7
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 6.8e-146 520.8 290 89.7
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 6.0e-142 507.7 290 87.6
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 3.0e-141 505.4 290 86.9
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 5.1e-141 504.6 290 85.2
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 8.6e-141 503.8 290 84.8
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 1.9e-140 502.7 290 84.5
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 1.9e-140 502.7 302 84.8
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 2.5e-140 502.3 290 86.9
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 4.3e-140 501.5 290 86.2
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 5.6e-140 501.1 290 86.6
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 7.3e-140 500.7 290 84.8
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.2e-139 500.0 290 85.9
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 1.6e-139 499.6 290 85.2
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.8e-139 498.8 288 84.0
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 2.8e-139 498.8 288 84.7
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 8.1e-139 497.3 289 85.1
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 1.4e-138 496.5 287 85.0
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 4.0e-138 495.0 289 84.1
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 6.8e-138 494.2 287 85.4
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 1.2e-137 493.4 287 85.4
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.2e-137 493.4 289 84.4
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 2.0e-137 492.7 290 84.5
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 2.0e-137 492.7 291 83.5
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 3.4e-137 491.9 290 82.4
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 3.4e-137 491.9 289 83.7
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 5.8e-137 491.1 289 83.4
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 9.9e-137 490.3 289 83.0
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 1.3e-136 490.0 290 82.4
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.7e-136 489.6 289 82.7
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 1.7e-136 489.6 290 83.8
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 2.2e-136 489.2 287 84.0
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 2.2e-136 489.2 289 83.4
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 2.9e-136 488.8 287 85.0
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 2.9e-136 488.8 289 83.4
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 6.4e-136 487.6 289 82.0
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 1.1e-135 486.9 291 82.8
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 1.4e-135 486.5 289 83.7
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 1.4e-135 486.5 289 82.0
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.4e-135 485.7 287 83.6
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.4e-135 485.7 287 83.6
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.2e-135 485.3 289 81.3
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.2e-135 485.0 289 81.3
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 7.1e-135 484.2 290 80.3
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 9.3e-135 483.8 287 82.9
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 1.6e-134 483.0 287 82.9
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 2.7e-134 482.3 290 80.3
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 2.7e-134 482.3 289 81.3
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 7.8e-134 480.7 289 81.0
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 7.8e-134 480.7 290 79.7
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 7.8e-134 480.7 289 82.7
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.0e-133 480.3 287 82.2
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 1.3e-133 479.9 287 82.9
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.7e-133 479.6 290 81.4
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 1.7e-133 479.6 287 82.6
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.7e-133 479.6 287 82.2
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 3.0e-133 478.8 287 82.6
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 3.9e-133 478.4 290 79.7
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 5.1e-133 478.0 290 81.4
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 5.1e-133 478.0 289 79.9
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 5.1e-133 478.0 289 79.9
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 8.7e-133 477.2 289 80.6
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 8.7e-133 477.2 287 82.6
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.1e-132 476.9 287 79.8
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 1.9e-132 476.1 287 79.8
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.9e-132 476.1 290 80.7
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.9e-132 476.1 289 80.6
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 3.3e-132 475.3 289 80.6
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.3e-132 474.9 288 80.6
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 5.6e-132 474.6 290 81.4
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 7.3e-132 474.2 286 80.1
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 9.6e-132 473.8 289 79.9
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 1.3e-131 473.4 289 79.9
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 2.8e-131 472.2 289 79.6
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 2.8e-131 472.2 290 81.0
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 2.8e-131 472.2 287 80.8
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 2.8e-131 472.2 288 80.6
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 3.6e-131 471.9 290 80.0
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 3.6e-131 471.9 289 79.6
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 3.6e-131 471.9 285 81.1
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 3.6e-131 471.9 290 80.7
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 6.2e-131 471.1 289 79.2
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 6.2e-131 471.1 289 79.2
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 6.2e-131 471.1 322 75.8
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 8.1e-131 470.7 289 79.6
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 8.1e-131 470.7 289 79.2
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 1.1e-130 470.3 293 81.9
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 1.8e-130 469.5 289 78.2
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.8e-130 469.5 288 79.9
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 2.4e-130 469.2 307 78.5
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 4.0e-130 468.4 291 80.8
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 9.0e-130 467.2 289 78.9
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 9.0e-130 467.2 289 78.9
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 1.2e-129 466.8 289 77.5
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 1.2e-129 466.8 289 78.9
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.5e-129 466.5 306 79.1
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 4.4e-129 464.9 289 77.2
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 4.4e-129 464.9 289 77.2
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 4.4e-129 464.9 289 77.2
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 7.6e-129 464.2 289 77.2
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 7.6e-129 464.2 289 77.2
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 1.3e-128 463.4 287 80.1
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 2.9e-128 462.2 287 80.8
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 6.4e-128 461.1 301 79.1
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 1.1e-127 460.3 290 77.9
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 1.1e-127 460.3 287 77.0
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 3.2e-127 458.8 290 76.9
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 9.3e-127 457.2 302 76.2
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.2e-126 456.8 293 78.8
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 1.6e-126 456.4 292 78.1
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.6e-126 456.4 293 78.2
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 1.0e-125 453.8 287 76.0
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 1.3e-125 453.4 287 76.0
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 3.0e-125 452.2 294 76.5
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 6.6e-125 451.1 290 76.2
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 5.3e-122 441.4 274 79.9
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.5e-121 439.9 261 85.1
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 1.5e-121 439.9 290 74.1
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.5e-121 439.9 448 56.2
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 7.6e-121 437.6 292 77.7
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 2.2e-120 436.0 287 74.6
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 6.7e-117 424.5 299 73.9
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 8.7e-117 424.1 290 73.8
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 1.1e-116 423.7 289 72.7
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.3e-115 420.2 289 71.6
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 8.1e-115 417.5 307 71.0
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 4.0e-114 415.2 232 88.4
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 4.0e-114 415.2 291 71.1
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 4.0e-114 415.2 290 69.7
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 5.3e-114 414.8 291 70.8
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 9.0e-114 414.1 291 70.8
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.7e-112 409.8 290 69.0
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 3.8e-112 408.7 290 68.3
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 4.2e-111 405.2 283 70.0
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 4.2e-111 405.2 256 76.2
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 1.2e-110 403.7 229 85.6
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 2.5e-108 396.0 293 67.9
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.3e-107 393.7 294 68.0
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 2.1e-107 392.9 257 75.5
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 3.7e-107 392.1 283 67.5
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 1.1e-103 380.6 232 79.7
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 2.2e-99 366.3 289 64.0
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 5.3e-98 361.7 298 65.8
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.6e-89 332.8 203 81.8
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 1.6e-86 323.6 285 59.6
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 7.2e-79 298.1 270 61.1
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 3.0e-77 292.7 287 53.0
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 1.8e-74 283.5 285 52.3
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 5.0e-72 275.4 164 82.9
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 8.5e-72 274.6 282 50.0
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 2.0e-68 263.5 281 48.0
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 2.3e-56 223.4 154 70.1
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 1.6e-54 217.2 113 91.2
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 3.0e-53 213.0 151 72.2
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 3.5e-49 199.5 140 72.1
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 7.6e-28 128.6 82 80.5
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.9e-23 114.0 80 72.5
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 7.3e-23 112.1 80 72.5
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 9.6e-23 111.7 124 49.2
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 8.1e-22 108.6 80 71.2
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 2.4e-21 107.1 63 84.1
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 8.9e-21 105.1 75 70.7
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 1.5e-20 104.4 152 40.8
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 7.6e-20 102.1 66 75.8
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 3.2e-18 96.7 85 60.0
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 3.5e-17 93.2 57 78.9
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 6.0e-17 92.4 70 67.1
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 1.5e-12 77.8 58 65.5
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 1.5e-12 77.8 58 65.5
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 8.4e-11 72.0 55 67.3
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 6.7e-08 62.4 32 90.6
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 1.1e-07 61.6 41 63.4
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 1.1e-07 61.6 65 53.8


User provided reference genes

Program Settings