Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 1.6e-24 115.2 52 100.0
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 3.5e-24 114.0 52 98.1
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 3.5e-24 114.0 52 98.1
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 3.5e-24 114.0 52 98.1
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 3.5e-24 114.0 52 98.1
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 3.5e-24 114.0 52 98.1
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 3.5e-24 114.0 52 98.1
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 3.5e-24 114.0 52 98.1
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 3.5e-24 114.0 52 98.1
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 3.5e-24 114.0 52 98.1
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 4.5e-24 113.6 52 96.2
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 7.7e-24 112.8 52 96.2
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 1.3e-23 112.1 52 96.2
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.3e-23 112.1 52 96.2
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.3e-23 112.1 52 96.2
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.3e-23 112.1 52 96.2
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.3e-23 112.1 52 96.2
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 1.3e-23 112.1 52 96.2
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.3e-23 112.1 52 96.2
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 2.9e-23 110.9 52 96.2
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 2.9e-23 110.9 52 96.2
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 2.9e-23 110.9 52 96.2
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 2.9e-23 110.9 52 92.3
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 6.5e-23 109.8 52 94.2
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 1.1e-22 109.0 52 94.2
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 1.5e-22 108.6 52 94.2
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 1.5e-22 108.6 52 94.2
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 1.5e-22 108.6 51 92.2
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 94.2
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 96.2
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 92.3
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 3.2e-22 107.5 50 96.0
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 3.2e-22 107.5 52 92.3
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 3.2e-22 107.5 52 92.3
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.2e-22 107.5 52 92.3
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.2e-22 107.5 52 92.3
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 3.2e-22 107.5 52 92.3
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 3.2e-22 107.5 52 92.3
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 3.2e-22 107.5 52 92.3
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 3.2e-22 107.5 53 96.2
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 3.2e-22 107.5 53 96.2
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 3.2e-22 107.5 52 92.3
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 4.2e-22 107.1 52 88.5
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 92.3
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 7.2e-22 106.3 53 92.5
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 88.5
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 92.3
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 1.6e-21 105.1 52 86.5
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.6e-21 105.1 52 88.5
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 1.6e-21 105.1 52 90.4
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 1.6e-21 105.1 52 90.4
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 86.5
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 88.5
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 2.7e-21 104.4 53 92.5
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 86.5
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 2.7e-21 104.4 53 92.5
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 3.6e-21 104.0 53 86.8
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 86.5
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 86.5
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 86.5
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 86.5
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 86.5
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 86.5
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 86.5
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 86.5
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 3.6e-21 104.0 47 100.0
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 86.5
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 86.5
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 4.7e-21 103.6 52 86.5
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 4.7e-21 103.6 52 86.5
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 4.7e-21 103.6 52 90.4
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 4.7e-21 103.6 52 90.4
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 4.7e-21 103.6 47 95.7
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 6.1e-21 103.2 50 88.0
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 6.1e-21 103.2 52 90.4
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 1.0e-20 102.4 46 95.7
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 90.4
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 4.0e-20 100.5 51 86.3
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 4.0e-20 100.5 44 97.7
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 4.0e-20 100.5 50 86.0
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 8.8e-20 99.4 46 93.5
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 1.5e-19 98.6 44 95.5
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 1.5e-19 98.6 54 87.0
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 1.5e-19 98.6 44 95.5
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 1.5e-19 98.6 44 95.5
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 1.5e-19 98.6 44 95.5
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 1.5e-19 98.6 44 95.5
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 2.0e-19 98.2 48 87.5
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.6e-19 97.8 53 83.0
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.6e-19 97.8 53 83.0
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.6e-19 97.8 46 89.1
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.6e-19 97.8 46 89.1
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.6e-19 97.8 46 89.1
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 3.3e-19 97.4 44 95.5
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 4.4e-19 97.1 46 89.1
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 5.7e-19 96.7 44 93.2
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 7.5e-19 96.3 50 84.0
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 9.7e-19 95.9 45 93.3
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 9.7e-19 95.9 44 90.9
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 1.3e-18 95.5 44 93.2
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 1.3e-18 95.5 45 91.1
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 1.3e-18 95.5 54 85.2
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 1.7e-18 95.1 46 89.1
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 1.7e-18 95.1 48 85.4
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 2.2e-18 94.7 50 78.0
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 2.8e-18 94.4 44 90.9
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.7e-18 94.0 44 90.9
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 3.7e-18 94.0 44 90.9
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 3.7e-18 94.0 48 89.6
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 6.3e-18 93.2 44 86.4
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 6.3e-18 93.2 53 79.2
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 8.2e-18 92.8 44 90.9
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.1e-17 92.4 46 91.3
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 1.1e-17 92.4 49 83.7
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.4e-17 92.0 40 97.5
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 3.1e-17 90.9 44 86.4
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 3.1e-17 90.9 44 86.4
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 3.1e-17 90.9 44 86.4
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 3.1e-17 90.9 44 86.4
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 3.1e-17 90.9 50 84.0
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 3.1e-17 90.9 50 84.0
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 3.1e-17 90.9 45 91.1
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 4.1e-17 90.5 44 88.6
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 5.3e-17 90.1 45 84.4
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.2e-16 89.0 52 67.3
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.2e-16 89.0 52 67.3
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 1.6e-16 88.6 43 88.4
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 3.5e-16 87.4 42 88.1
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 5.9e-16 86.7 47 85.1
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 5.9e-16 86.7 47 85.1
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 7.7e-16 86.3 52 71.2
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 1.0e-15 85.9 67 64.2
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 2.9e-15 84.3 43 86.0
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 3.8e-15 84.0 43 81.4
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 3.8e-15 84.0 42 85.7
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 8.5e-15 82.8 44 81.8
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 8.5e-15 82.8 50 76.0
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 8.5e-15 82.8 53 71.7
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 1.1e-14 82.4 45 77.8
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.1e-13 78.2 48 62.5
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 3.6e-13 77.4 66 59.1
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 6.1e-13 76.6 54 64.8
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 8.0e-13 76.3 84 48.8
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.2e-11 72.4 39 74.4
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 1.5e-11 72.0 34 88.2
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 7.5e-11 69.7 35 82.9
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 1.3e-10 68.9 58 53.4
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 1.3e-10 68.9 83 49.4
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 2.2e-10 68.2 41 73.2
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 4.8e-10 67.0 32 84.4
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 8.3e-10 66.2 52 59.6
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 3.1e-09 64.3 57 49.1
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 3.1e-09 64.3 57 49.1
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 5.4e-09 63.5 57 49.1
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 9.1e-09 62.8 49 53.1
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 2.0e-08 61.6 31 83.9
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 2.0e-08 61.6 31 83.9
arahy.Tifrunner.gnm1.ann1.VGS9ID Arachis hypogaea HOM05D004494 ORTHO05D005493 1.3e-07 58.9 37 64.9
arahy.Tifrunner.gnm1.ann1.H77AQF Arachis hypogaea HOM05D004494 ORTHO05D005493 3.2e-06 54.3 25 92.0
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 3.2e-06 54.3 49 46.9


User provided reference genes

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