Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 2.5e-270 934.9 486 100.0
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.1e-244 849.7 509 90.0
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 4.1e-135 485.7 510 54.5
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 1.1e-132 477.6 498 56.0
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 1.5e-132 477.2 504 56.0
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 2.7e-131 473.0 505 54.3
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.7e-131 473.0 522 54.8
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 2.3e-130 469.9 498 54.8
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 2.0e-126 456.8 531 51.0
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 2.7e-126 456.4 500 54.6
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 6.5e-125 451.8 514 53.1
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 5.5e-124 448.7 492 53.9
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 7.2e-124 448.4 496 52.0
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 9.4e-124 448.0 509 52.1
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.6e-123 447.2 520 52.3
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 1.4e-122 444.1 506 52.4
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.8e-122 443.7 508 51.6
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 5.2e-122 442.2 507 50.5
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 3.4e-121 439.5 505 51.5
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 9.8e-121 438.0 497 52.5
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.3e-120 437.6 509 51.7
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.3e-120 437.6 494 52.8
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 2.8e-120 436.4 509 51.7
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.1e-119 434.5 510 50.0
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.4e-119 434.1 501 51.9
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.8e-119 433.7 502 50.8
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 2.4e-119 433.3 497 50.3
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 3.1e-119 433.0 487 52.4
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 4.1e-119 432.6 481 53.8
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 2.9e-117 426.4 359 62.4
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 2.9e-117 426.4 516 51.2
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 6.5e-117 425.2 437 54.7
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.9e-116 423.7 497 52.5
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.9e-116 423.7 510 51.8
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 4.2e-116 422.5 509 52.5
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 2.8e-115 419.9 488 52.3
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 6.1e-115 418.7 512 49.8
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.3e-114 416.8 487 51.3
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 5.7e-113 412.1 534 50.6
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 7.5e-113 411.8 562 48.0
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 9.8e-113 411.4 536 49.6
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 9.8e-113 411.4 413 55.9
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 2.2e-112 410.2 528 48.7
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.7e-112 409.5 438 54.8
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.9e-112 409.1 475 51.6
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.4e-111 407.5 492 49.8
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 2.4e-111 406.8 546 47.6
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.2e-110 404.4 460 51.7
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 2.0e-110 403.7 492 49.4
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 2.0e-110 403.7 494 50.0
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 5.9e-110 402.1 330 65.5
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 5.9e-110 402.1 509 49.1
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 2.9e-109 399.8 358 59.2
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.1e-108 397.9 492 48.8
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 1.1e-108 397.9 545 46.1
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 5.6e-108 395.6 543 47.3
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 1.2e-107 394.4 482 50.4
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.1e-107 393.7 351 61.8
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.8e-107 393.3 526 47.1
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 2.3e-106 390.2 466 50.2
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 4.0e-106 389.4 470 50.6
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 5.2e-106 389.0 487 47.6
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 8.9e-106 388.3 452 52.2
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 8.9e-106 388.3 353 58.9
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 1.3e-104 384.4 455 49.9
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.3e-104 384.4 461 49.9
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 1.4e-103 380.9 388 54.6
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.1e-103 379.4 367 56.4
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.6e-102 377.5 356 57.9
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.7e-102 376.7 340 59.4
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 5.9e-102 375.6 356 57.0
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 1.3e-101 374.4 506 45.8
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.5e-100 370.9 457 49.7
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 5.2e-98 362.5 491 46.6
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 5.2e-98 362.5 531 44.8
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 8.9e-98 361.7 361 57.3
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.2e-97 361.3 381 54.1
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 3.4e-97 359.8 373 52.5
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 4.4e-97 359.4 491 46.8
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 7.5e-97 358.6 457 48.1
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.9e-96 356.7 434 47.7
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 1.9e-95 354.0 446 49.3
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.9e-95 354.0 428 49.8
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.3e-93 347.8 454 48.2
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 4.3e-92 342.8 516 43.8
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 4.0e-90 336.3 584 39.9
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.8e-90 335.5 481 46.6
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 4.9e-88 329.3 472 47.0
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 3.4e-81 306.6 418 46.9
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 6.6e-77 292.4 329 55.6
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.9e-76 290.8 311 55.9
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.1e-75 287.3 343 49.0
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.8e-75 287.0 304 53.0
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 2.6e-73 280.4 403 45.9
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 2.6e-73 280.4 469 41.2
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 6.0e-70 269.2 348 44.5
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 1.0e-69 268.5 185 70.3
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.1e-68 265.0 215 65.1
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 2.8e-67 260.4 408 40.7
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.8e-66 257.7 286 50.0
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.4e-66 257.3 386 46.1
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.4e-63 246.1 388 44.6
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.6e-62 244.6 277 50.5
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 1.8e-58 231.1 233 56.7
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-57 228.0 276 47.8
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 1.5e-57 228.0 515 33.8
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.3e-56 224.9 275 47.6
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.9e-56 223.8 268 50.0
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 4.2e-55 219.9 274 45.6
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 4.2e-55 219.9 275 44.7
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.6e-54 218.0 275 44.4
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 2.1e-54 217.6 194 57.2
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.3e-53 214.9 142 71.8
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 2.3e-53 214.2 182 60.4
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 8.7e-53 212.2 149 69.8
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 7.4e-52 209.1 277 45.8
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 3.1e-50 203.8 286 43.7
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-49 201.8 286 43.7
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 1.5e-49 201.4 286 43.4
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.9e-48 197.2 166 59.0
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 4.2e-47 193.4 277 43.7
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.1e-46 191.0 166 59.0
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 6.0e-46 189.5 166 59.0
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.3e-45 187.6 296 40.5
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.4e-42 178.3 169 54.4
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 2.2e-40 171.0 121 66.9
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 1.9e-39 167.9 195 52.8
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 2.5e-39 167.5 284 43.0
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 3.2e-39 167.2 180 51.1
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 4.6e-38 163.3 271 41.0
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 3.4e-33 147.1 281 36.3
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.4e-29 135.2 268 33.2
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.4e-28 129.4 115 57.4
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.8e-27 127.5 176 46.0
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 3.7e-27 127.1 188 42.6
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 3.4e-25 120.6 142 48.6
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.7e-25 119.4 216 39.8
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 2.5e-23 114.4 389 25.4
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 4.7e-22 110.2 99 63.6
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 5.3e-18 96.7 270 32.6
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-17 95.5 178 38.2
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 2.6e-17 94.4 88 52.3
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 5.9e-17 93.2 63 61.9
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 5.9e-17 93.2 177 37.9
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 1.0e-16 92.4 174 32.8
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 1.0e-13 82.4 131 42.0
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 1.0e-13 82.4 66 59.1
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.8e-13 81.6 130 42.3
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 3.0e-13 80.9 56 58.9
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 1.4e-10 72.0 92 51.1
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.5e-09 67.4 43 79.1
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 1.2e-06 58.9 36 72.2
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 3.6e-06 57.4 30 86.7


User provided reference genes

Program Settings