Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 8.2e-38 159.8 78 100.0
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 3.5e-36 154.5 78 94.9
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 3.5e-36 154.5 78 96.2
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 1.0e-35 152.9 78 92.3
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.3e-35 152.5 78 96.2
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.3e-35 152.5 78 96.2
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.3e-35 152.5 78 96.2
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 1.3e-35 152.5 78 96.2
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.1e-34 149.4 78 94.9
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 4.2e-34 147.5 72 97.2
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 9.4e-34 146.4 78 87.2
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 1.4e-32 142.5 78 83.3
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.8e-32 142.1 78 89.7
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 7.5e-31 136.7 70 85.7
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 1.7e-30 135.6 74 79.7
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 2.2e-30 135.2 70 84.3
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 2.2e-30 135.2 77 77.9
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 2.2e-30 135.2 70 82.9
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 2.8e-30 134.8 70 82.9
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 3.7e-30 134.4 75 78.7
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 4.8e-30 134.0 75 74.7
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 4.8e-30 134.0 78 85.9
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 4.8e-30 134.0 72 79.2
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 1.4e-29 132.5 74 77.0
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 3.1e-29 131.3 72 77.8
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 4.1e-29 131.0 70 80.0
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 4.1e-29 131.0 70 80.0
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 7.0e-29 130.2 79 77.2
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 9.1e-29 129.8 70 78.6
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.2e-28 129.4 78 75.6
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 2.7e-28 128.3 72 76.4
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 3.5e-28 127.9 70 80.0
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 3.5e-28 127.9 70 80.0
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 3.5e-28 127.9 70 80.0
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 5.9e-28 127.1 70 80.0
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 7.7e-28 126.7 71 74.6
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 1.0e-27 126.3 71 73.2
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 1.0e-27 126.3 80 73.8
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 1.0e-27 126.3 70 78.6
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 1.0e-27 126.3 70 78.6
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 1.0e-27 126.3 70 78.6
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 1.0e-27 126.3 74 71.6
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 1.3e-27 125.9 71 77.5
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 2.2e-27 125.2 70 75.7
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 2.2e-27 125.2 72 73.6
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 2.2e-27 125.2 72 73.6
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 2.2e-27 125.2 72 73.6
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 2.9e-27 124.8 74 70.3
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.0e-27 124.0 72 76.4
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.0e-27 124.0 72 76.4
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 8.5e-27 123.2 70 75.7
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 8.5e-27 123.2 70 77.1
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 1.1e-26 122.9 77 72.7
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 1.9e-26 122.1 74 68.9
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 1.9e-26 122.1 74 70.3
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 2.5e-26 121.7 74 68.9
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 5.5e-26 120.6 59 94.9
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 1.2e-25 119.4 68 79.4
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 2.3e-24 115.2 71 74.6
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 3.0e-24 114.8 70 81.4
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 3.0e-24 114.8 70 81.4
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 3.0e-24 114.8 70 81.4
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 3.0e-24 114.8 70 81.4
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 3.0e-24 114.8 70 81.4
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 4.0e-24 114.4 72 69.4
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 7.5e-23 110.2 67 76.1
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 9.8e-23 109.8 70 78.6
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 6.3e-22 107.1 71 67.6
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 6.3e-22 107.1 70 68.6
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 6.3e-22 107.1 77 66.2
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.3e-22 107.1 77 66.2
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 6.3e-22 107.1 65 80.0
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 8.3e-22 106.7 70 67.1
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 8.3e-22 106.7 70 67.1
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 8.3e-22 106.7 70 67.1
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 1.1e-21 106.3 70 65.7
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 1.1e-21 106.3 70 65.7
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 1.1e-21 106.3 70 65.7
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 1.8e-21 105.5 70 67.1
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 5.4e-21 104.0 76 64.5
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 9.1e-21 103.2 77 61.0
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 1.6e-20 102.4 70 68.6
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 3.5e-20 101.3 56 89.3
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 2.3e-19 98.6 53 79.2
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 5.0e-19 97.4 75 66.7
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 8.6e-19 96.7 76 68.4
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.9e-18 95.5 80 72.5
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 1.2e-17 92.8 63 68.3
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 2.1e-17 92.0 55 72.7
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.1e-17 92.0 55 72.7
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.1e-17 92.0 55 72.7
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 2.1e-17 92.0 55 72.7
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-17 92.0 63 68.3
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 2.8e-17 91.7 63 66.7
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 7.5e-15 83.6 74 56.8
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 7.5e-15 83.6 80 65.0
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.2e-14 82.0 55 69.1
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 1.8e-13 79.0 59 62.7
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 9.2e-13 76.6 80 60.0
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.2e-12 76.3 80 52.5
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.2e-12 76.3 58 65.5
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 1.2e-12 76.3 58 65.5
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.6e-12 75.9 70 44.3
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 7.8e-12 73.6 38 89.5
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.0e-11 73.2 80 51.2
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 2.3e-11 72.0 47 80.9
MELO3C027952.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.5e-10 69.3 61 70.5
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 1.9e-10 68.9 45 75.6
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.3e-10 67.8 35 88.6
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.3e-10 67.8 35 88.6
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.3e-10 67.8 35 88.6
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 9.5e-10 66.6 60 43.3
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 3.6e-09 64.7 39 84.6
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 3.6e-09 64.7 40 77.5
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 4.7e-09 64.3 68 44.1
MELO3C030417.2 Cucumis melo HOM05D002824 ORTHO05D008771 8.0e-09 63.5 61 67.2
COL.COLO4_02277 Corchorus olitorius HOM05D002824 ORTHO05D008771 1.0e-08 63.2 43 79.1
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 5.2e-08 60.8 44 70.5
EL10Ac5g11781 Beta vulgaris HOM05D002824 ORTHO05D008771 1.3e-06 56.2 38 76.3
Nitab4.5_0002229g0270 Nicotiana tabacum HOM05D002824 ORTHO05D008771 4.9e-06 54.3 31 77.4


User provided reference genes

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