Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 0.0e+00 1450.3 719 100.0
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 0.0e+00 1428.3 719 98.3
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1135.6 718 79.5
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1122.1 706 78.5
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 0.0e+00 1117.4 715 77.6
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1105.5 709 77.9
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1098.2 716 76.5
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1095.5 715 76.1
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1088.6 707 77.1
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1077.8 707 75.0
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1077.8 719 75.0
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1077.0 717 75.0
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1075.5 706 76.3
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 2.5e-311 1071.6 719 74.1
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 2.2e-310 1068.5 715 74.5
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 6.3e-310 1067.0 706 75.9
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 4.1e-309 1064.3 718 73.7
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 7.0e-309 1063.5 707 75.0
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 1.6e-308 1062.4 715 74.7
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 4.5e-308 1060.8 717 75.2
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 4.3e-306 1054.3 717 74.1
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 9.5e-306 1053.1 716 73.6
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 6.1e-305 1050.4 716 73.3
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 8.0e-305 1050.0 716 72.9
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 8.0e-305 1050.0 717 73.9
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 1.0e-304 1049.7 717 73.9
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 1.0e-304 1049.7 709 74.0
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 2.3e-304 1048.5 716 73.0
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 6.8e-304 1047.0 715 72.6
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 3.4e-303 1044.6 700 73.9
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 2.2e-302 1042.0 722 72.7
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.9e-302 1041.6 713 72.8
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 2.9e-302 1041.6 722 72.2
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 1.4e-301 1039.3 704 72.7
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 2.4e-301 1038.5 702 72.6
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 5.4e-301 1037.3 704 73.2
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 5.4e-301 1037.3 702 72.6
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 1.3e-299 1032.7 716 72.8
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 6.6e-299 1030.4 702 72.4
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 1.1e-298 1029.6 702 72.8
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 1.9e-298 1028.9 709 72.2
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 1.9e-298 1028.9 716 71.1
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 2.5e-298 1028.5 706 72.9
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 2.8e-297 1025.0 702 73.1
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 4.7e-297 1024.2 797 66.8
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 6.2e-297 1023.8 714 71.6
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 1.4e-296 1022.7 706 71.7
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 2.3e-296 1021.9 713 71.2
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 2.3e-296 1021.9 716 70.4
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 5.8e-295 1017.3 703 71.4
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 7.5e-295 1016.9 705 70.8
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 1.7e-294 1015.8 712 71.2
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 2.2e-294 1015.4 717 70.7
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.9e-293 1012.3 707 72.1
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 1.6e-292 1009.2 716 69.6
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 2.3e-291 1005.4 740 69.7
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 8.6e-291 1003.4 705 71.8
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 8.6e-291 1003.4 706 71.7
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 1.1e-290 1003.0 706 70.7
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 1.1e-290 1003.0 706 71.8
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 9.5e-290 1000.0 713 70.7
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 8.1e-289 996.9 724 69.9
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 3.1e-288 995.0 707 71.1
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 5.2e-288 994.2 731 68.9
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 5.2e-288 994.2 714 69.9
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 2.6e-287 991.9 715 68.4
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 2.2e-286 988.8 705 69.9
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 3.7e-286 988.0 715 68.5
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 8.3e-286 986.9 709 68.1
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 1.9e-285 985.7 717 68.2
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 3.2e-285 984.9 711 68.6
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.2e-284 983.0 719 68.6
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 2.1e-284 982.2 719 68.4
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 4.6e-284 981.1 706 68.6
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 7.8e-284 980.3 665 73.4
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 1.0e-283 979.9 716 67.9
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 1.3e-283 979.5 713 67.6
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 5.6e-282 974.2 715 67.3
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 9.5e-282 973.4 715 67.7
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 2.1e-281 972.2 719 66.5
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 1.4e-280 969.5 708 67.9
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 4.2e-277 958.0 708 67.7
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.6e-276 956.1 701 67.8
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 1.0e-267 926.8 788 60.3
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 1.5e-263 912.9 592 76.5
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 5.8e-263 911.0 706 65.0
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 3.2e-261 905.2 710 64.6
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 5.4e-261 904.4 772 61.4
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 1.3e-259 899.8 726 62.8
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 2.5e-258 895.6 708 65.5
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 1.4e-256 889.8 709 65.3
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 1.2e-255 886.7 692 64.5
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 2.9e-254 882.1 572 77.3
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.9e-253 879.4 721 62.4
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 3.1e-248 862.1 611 71.0
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 2.8e-233 812.4 705 60.7
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 1.9e-229 799.7 550 72.7
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 1.5e-223 780.0 515 74.8
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 1.4e-216 756.9 709 53.6
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 3.4e-210 735.7 700 53.4
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 7.7e-199 698.0 737 54.4
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 8.6e-190 667.9 707 48.8
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 2.1e-188 663.3 883 42.2
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 6.8e-179 631.7 701 50.1
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 5.8e-178 628.6 845 42.5
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 3.7e-177 625.9 456 68.9
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 1.1e-165 587.8 505 58.4
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 8.1e-156 555.1 399 69.9
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 8.7e-150 535.0 750 42.1
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 7.3e-149 531.9 756 42.3
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 4.6e-135 486.1 729 39.4
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 5.7e-133 479.2 753 40.1
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 2.4e-131 473.8 811 36.7
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.1e-117 428.3 299 73.6
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 3.3e-117 426.8 328 67.7
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 1.4e-115 421.4 353 61.8
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.2e-77 295.4 308 51.0
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.1e-75 288.9 215 66.0
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 1.6e-63 248.4 196 62.8
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.3e-57 228.0 178 63.5
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 1.2e-53 215.7 149 70.5
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 2.1e-39 168.3 102 80.4
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 2.7e-34 151.4 106 69.8
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 1.0e-33 149.4 191 49.7
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 4.0e-30 137.5 117 58.1
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 3.4e-29 134.4 106 68.9
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 2.7e-26 124.8 104 57.7
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 1.8e-22 112.1 61 82.0
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.5e-21 109.0 148 43.2
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.3e-17 95.9 92 52.2
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 5.3e-14 84.0 57 68.4
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.0e-09 69.7 37 83.8
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 1.0e-09 69.7 64 53.1
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 3.0e-09 68.2 70 48.6
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 4.1e-06 57.8 59 52.5


User provided reference genes

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