Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 8.6e-157 557.0 291 100.0
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 6.2e-155 550.8 291 98.6
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 5.6e-132 474.6 277 86.3
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.6e-131 473.0 277 85.6
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.1e-130 470.3 277 86.3
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 1.1e-130 470.3 277 85.9
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 1.4e-130 469.9 291 85.2
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 4.0e-130 468.4 291 85.2
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 4.0e-130 468.4 277 86.3
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.3e-130 468.0 277 84.5
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.2e-129 466.8 277 84.8
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 1.2e-129 466.8 277 85.9
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 2.0e-129 466.1 277 84.5
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.0e-129 466.1 291 81.8
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.4e-129 465.3 277 84.5
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 3.4e-129 465.3 277 84.5
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 5.8e-129 464.5 277 84.5
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 7.6e-129 464.2 277 84.5
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 7.6e-129 464.2 275 85.1
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 1.3e-128 463.4 277 84.5
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 1.3e-128 463.4 277 84.5
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 2.9e-128 462.2 277 84.5
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.9e-128 462.2 291 81.1
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 2.9e-128 462.2 276 84.8
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 3.8e-128 461.8 277 84.1
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 3.8e-128 461.8 293 81.2
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 3.8e-128 461.8 276 85.1
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 6.4e-128 461.1 275 85.1
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.1e-127 460.3 277 84.1
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.4e-127 459.9 277 84.5
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.4e-127 459.9 277 84.5
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 1.4e-127 459.9 291 82.8
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.9e-127 459.5 277 82.7
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.9e-127 459.5 277 83.4
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 7.1e-127 457.6 277 83.8
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.2e-126 456.8 290 81.0
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.2e-126 456.8 277 84.1
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.2e-126 456.8 276 84.1
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.1e-126 456.1 277 84.1
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 3.5e-126 455.3 277 82.7
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 7.9e-126 454.1 277 82.3
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.3e-125 453.4 276 83.3
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.8e-125 453.0 276 84.4
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 2.3e-125 452.6 277 81.9
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.3e-125 452.6 277 83.0
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.9e-125 451.8 303 77.2
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 8.7e-125 450.7 276 83.3
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.1e-124 450.3 278 82.0
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 3.3e-124 448.7 277 83.0
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 4.3e-124 448.4 278 82.0
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 9.6e-124 447.2 278 82.0
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.3e-123 446.8 308 75.3
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 1.6e-123 446.4 277 80.9
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 1.6e-123 446.4 277 83.4
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 3.7e-123 445.3 277 81.9
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 3.7e-123 445.3 277 81.9
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 6.2e-123 444.5 290 79.0
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 1.1e-122 443.7 317 73.5
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 2.4e-122 442.6 291 80.4
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 3.1e-122 442.2 278 80.9
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.5e-121 439.9 277 81.6
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.4e-121 438.7 282 79.4
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 4.5e-121 438.3 277 80.5
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 5.8e-121 438.0 291 79.4
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 1.7e-120 436.4 288 79.2
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 3.8e-120 435.3 277 78.7
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.1e-119 433.7 277 79.4
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.1e-119 433.7 277 79.4
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.4e-119 433.3 277 79.1
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.9e-119 433.0 278 79.1
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 3.2e-119 432.2 277 79.4
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 2.1e-118 429.5 277 77.6
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.7e-118 429.1 279 78.5
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 6.0e-118 427.9 277 78.0
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 2.3e-117 426.0 277 78.0
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 2.3e-117 426.0 277 78.7
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 3.0e-117 425.6 277 77.3
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.1e-116 423.7 279 76.3
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 1.1e-116 423.7 323 73.4
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.5e-116 423.3 300 73.7
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.9e-116 422.9 278 77.0
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.9e-116 422.9 278 77.0
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 1.9e-116 422.9 313 70.6
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 2.5e-116 422.5 296 75.3
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 3.3e-116 422.2 277 78.0
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 3.3e-116 422.2 294 72.8
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 5.7e-116 421.4 276 76.8
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 9.7e-116 420.6 279 76.3
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 1.3e-115 420.2 278 76.3
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 1.3e-115 420.2 301 74.4
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 2.2e-115 419.5 286 78.0
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 3.7e-115 418.7 286 78.0
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 1.1e-114 417.2 315 71.1
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.4e-114 416.8 279 77.1
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 4.1e-114 415.2 278 75.9
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 9.0e-114 414.1 278 76.6
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 1.5e-113 413.3 277 78.7
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 2.6e-113 412.5 286 76.2
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 3.4e-113 412.1 301 71.4
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 3.4e-113 412.1 277 76.9
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 3.4e-113 412.1 277 76.9
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.5e-113 411.8 282 72.0
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.2e-111 405.6 277 74.0
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 5.5e-111 404.8 262 78.2
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 1.0e-109 400.6 284 75.0
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.0e-109 399.1 313 67.7
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 4.2e-103 378.6 237 81.0
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 7.2e-103 377.9 226 85.8
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 8.8e-101 370.9 268 69.4
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.5e-97 360.1 228 79.4
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.0e-97 359.8 277 69.0
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.0e-97 359.8 277 69.0
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.0e-93 347.4 277 67.9
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 5.2e-93 345.1 278 66.9
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 7.4e-92 341.3 260 68.1
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 9.7e-92 340.9 205 84.9
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.0e-89 333.2 257 68.1
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 3.5e-89 332.4 283 62.2
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 2.5e-87 326.2 283 60.8
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 9.4e-87 324.3 281 60.5
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.0e-84 316.6 270 64.1
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.2e-81 307.4 268 61.9
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.6e-81 307.0 298 57.7
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 7.7e-81 304.7 227 73.6
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.2e-79 299.3 203 72.4
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 3.2e-79 299.3 180 84.4
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 3.6e-78 295.8 182 83.5
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 2.6e-76 289.7 191 77.5
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.8e-74 283.5 268 56.7
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 3.6e-70 269.2 182 75.3
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 1.9e-63 246.9 246 59.8
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.2e-60 237.7 147 83.0
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 1.2e-60 237.7 191 64.9
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.4e-45 187.6 107 86.0
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 6.8e-45 185.3 116 80.2
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.2e-43 180.3 260 42.3
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 4.9e-43 179.1 113 77.9
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 2.7e-41 173.3 113 82.3
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 3.4e-36 156.4 135 67.4
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 2.9e-35 153.3 94 81.9
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 8.4e-35 151.8 98 75.5
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 1.4e-34 151.0 107 72.0
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 4.2e-34 149.4 269 34.9
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.6e-31 139.0 81 85.2
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 1.4e-29 134.4 84 78.6
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 6.9e-29 132.1 80 80.0
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 3.4e-28 129.8 66 93.9
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 4.2e-26 122.9 251 32.7
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 5.4e-26 122.5 222 39.6
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.1e-26 122.1 261 32.6
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 4.6e-25 119.4 119 58.8
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 4.6e-25 119.4 119 58.8
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 7.8e-25 118.6 119 58.0
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.7e-24 117.5 106 62.3
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 3.0e-24 116.7 119 58.0
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 3.0e-24 116.7 119 58.0
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 3.9e-24 116.3 119 58.8
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 4.3e-23 112.8 119 58.0
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 9.6e-23 111.7 119 55.5
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 3.8e-19 99.8 155 40.0
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 4.9e-19 99.4 87 63.2
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.1e-18 98.2 155 41.3
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 5.4e-18 95.9 83 62.7
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.1e-15 88.2 45 95.6
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 1.2e-12 78.2 105 42.9
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 2.6e-12 77.0 43 83.7


User provided reference genes

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