Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 0.0e+00 1292.3 707 100.0
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 4.9e-254 881.3 717 71.3
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 7.8e-252 874.0 718 70.8
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 2.4e-237 825.9 686 68.2
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 6.8e-232 807.7 714 65.1
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.4e-229 800.0 714 64.3
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 3.0e-227 792.3 713 63.1
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 3.0e-227 792.3 714 64.6
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.9e-226 789.6 710 64.6
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 9.5e-226 787.3 715 64.3
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 1.4e-224 783.5 720 65.6
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 4.0e-224 781.9 712 61.5
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 1.5e-223 780.0 715 64.2
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.3e-222 776.9 719 61.9
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.9e-222 775.8 712 61.4
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 8.4e-222 774.2 716 67.2
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.1e-221 773.9 719 65.9
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 3.2e-221 772.3 716 68.2
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 2.7e-220 769.2 714 60.6
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 2.3e-219 766.1 683 63.3
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 5.6e-218 761.5 592 68.8
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 2.8e-217 759.2 716 62.3
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 3.4e-215 752.3 709 60.2
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.8e-214 748.8 712 62.5
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.2e-212 743.8 715 61.7
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 6.6e-211 738.0 712 61.7
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 2.5e-210 736.1 718 59.1
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 9.6e-210 734.2 729 60.5
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 9.6e-210 734.2 735 61.6
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 2.8e-209 732.6 708 63.6
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 6.2e-209 731.5 729 60.2
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 8.1e-209 731.1 734 60.4
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 8.1e-209 731.1 712 61.4
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 1.8e-208 729.9 725 64.4
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 1.8e-208 729.9 713 62.4
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 6.9e-208 728.0 720 60.1
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 1.2e-207 727.2 714 60.4
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.2e-207 727.2 716 61.2
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 4.5e-207 725.3 726 62.3
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 7.6e-207 724.5 719 59.5
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 7.6e-207 724.5 742 58.2
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 7.6e-207 724.5 710 61.0
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 6.4e-206 721.5 723 58.4
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 6.4e-206 721.5 711 62.2
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 3.2e-205 719.2 712 59.8
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 9.3e-205 717.6 713 61.0
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.6e-204 716.8 667 63.1
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 1.6e-204 716.8 712 59.8
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 3.5e-204 715.7 712 59.8
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 1.3e-203 713.8 716 58.0
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 1.8e-203 713.4 711 60.6
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 5.1e-203 711.8 727 61.5
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.1e-202 710.7 714 58.1
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 1.5e-202 710.3 717 59.1
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 9.6e-202 707.6 717 58.3
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 6.2e-201 704.9 718 58.5
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 3.1e-200 702.6 723 58.8
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.2e-199 700.7 722 60.2
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 4.9e-198 695.3 709 59.1
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 9.3e-197 691.0 724 61.5
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 1.2e-196 690.6 710 59.6
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 5.1e-195 685.3 728 57.8
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 1.1e-194 684.1 714 57.4
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 3.3e-194 682.6 720 58.5
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 1.4e-192 677.2 714 56.3
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 2.4e-192 676.4 717 59.8
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 9.0e-192 674.5 732 56.0
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 7.6e-191 671.4 720 55.7
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 4.9e-190 668.7 650 60.0
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 8.4e-190 667.9 730 58.8
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 1.4e-189 667.2 718 57.7
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 2.5e-189 666.4 710 56.8
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 7.9e-188 661.4 713 56.8
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 7.9e-188 661.4 720 57.8
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 1.9e-186 656.8 725 57.9
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 4.3e-186 655.6 718 56.4
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.2e-185 653.3 571 61.6
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 2.8e-185 652.9 710 56.9
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 4.8e-185 652.1 724 57.6
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 1.8e-184 650.2 720 58.3
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 4.1e-184 649.0 728 61.3
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 2.0e-183 646.7 728 58.1
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 1.9e-181 640.2 717 56.3
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 2.5e-181 639.8 717 56.3
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 3.2e-181 639.4 698 58.9
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 5.5e-181 638.6 718 56.7
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 9.4e-181 637.9 762 56.3
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 5.1e-179 632.1 718 56.7
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 6.7e-179 631.7 723 55.9
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.1e-178 630.9 733 54.6
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 5.7e-178 628.6 717 55.8
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 3.7e-177 625.9 716 56.4
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 3.1e-176 622.9 724 55.2
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 3.4e-175 619.4 714 56.9
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.2e-172 610.9 712 54.6
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.6e-172 610.5 738 53.4
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 3.9e-163 579.3 600 56.2
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 3.7e-161 572.8 596 57.0
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 4.8e-161 572.4 596 57.2
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 1.4e-160 570.9 660 58.3
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 2.2e-158 563.5 569 58.7
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.5e-149 534.3 563 56.5
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 9.8e-146 521.5 567 55.2
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 9.1e-144 515.0 682 47.2
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 9.1e-144 515.0 437 68.4
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 9.1e-144 515.0 596 53.0
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 5.9e-143 512.3 648 48.9
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 2.5e-141 506.9 589 51.6
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 1.0e-134 485.0 613 49.1
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 4.3e-133 479.6 510 55.3
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 9.2e-120 435.3 370 65.4
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 2.3e-115 420.6 344 68.6
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 4.3e-109 399.8 604 43.2
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 1.2e-108 398.3 411 55.5
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 5.2e-107 392.9 336 65.5
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 3.2e-104 383.6 347 63.7
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 5.6e-101 372.9 357 62.2
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 4.0e-99 366.7 825 34.8
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 1.4e-96 358.2 810 34.6
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 1.6e-92 344.7 350 61.1
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 1.7e-89 334.7 371 53.1
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 7.1e-72 276.2 397 46.6
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 7.4e-69 266.2 344 57.6
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 4.1e-67 260.4 412 41.7
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 8.5e-65 252.7 314 58.0
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.3e-60 236.5 311 47.6
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 1.7e-57 228.4 142 82.4
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 7.2e-56 223.0 303 49.5
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.0e-53 214.9 221 56.1
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.1e-43 182.6 127 75.6
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.2e-39 169.1 177 48.6
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 4.0e-38 164.1 290 39.7
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 4.4e-37 160.6 209 51.2
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 7.7e-34 149.8 142 61.3
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 8.3e-28 129.8 419 27.2
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 1.2e-26 125.9 132 52.3
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 2.0e-18 98.6 78 69.2
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 5.4e-11 73.9 146 47.9
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.0e-09 69.7 60 58.3
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.9e-08 65.5 62 46.8
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 5.6e-08 63.9 52 57.7
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 1.4e-06 59.3 64 42.2
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 3.1e-06 58.2 64 42.2
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 5.2e-06 57.4 64 43.8
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 6.8e-06 57.0 44 54.5
PRCOL_00003511 Prasinoderma coloniale HOM05D005511 ORTHO05D006616 6.8e-06 57.0 65 40.0
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 6.8e-06 57.0 64 43.8
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 6.8e-06 57.0 76 42.1
SEGI_09522 Sequoiadendron giganteum HOM05D000874 ORTHO05D001267 6.8e-06 57.0 65 47.7
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 6.8e-06 57.0 70 38.6
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 8.9e-06 56.6 64 40.6
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 8.9e-06 56.6 64 43.8
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 8.9e-06 56.6 64 43.8
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 8.9e-06 56.6 64 43.8
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 8.9e-06 56.6 64 43.8
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 8.9e-06 56.6 64 40.6


User provided reference genes

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