Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 0.0e+00 1083.9 543 100.0
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 0.0e+00 1076.2 543 99.3
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 3.7e-153 545.8 536 52.2
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 6.8e-147 525.0 543 51.0
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.2e-137 493.4 533 49.3
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 4.9e-137 492.3 533 49.3
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 3.5e-135 486.1 525 48.0
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 6.0e-135 485.3 530 49.4
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 7.3e-133 478.4 528 47.7
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 9.5e-133 478.0 519 48.2
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.6e-132 477.2 533 47.7
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 2.6e-130 469.9 534 46.3
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 1.7e-129 467.2 525 47.0
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 2.9e-129 466.5 537 46.4
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.9e-129 466.5 542 47.0
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.6e-127 460.7 530 47.4
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 2.1e-127 460.3 527 47.6
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.1e-127 460.3 530 47.5
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 7.8e-127 458.4 525 47.4
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.0e-126 458.0 534 47.4
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 1.3e-126 457.6 521 45.9
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.7e-126 457.2 520 46.7
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 5.1e-126 455.7 538 46.3
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 6.6e-126 455.3 524 46.0
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 8.6e-126 454.9 529 45.7
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 3.3e-125 453.0 533 45.0
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 1.2e-124 451.1 528 44.9
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.1e-124 450.3 525 45.9
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 6.2e-124 448.7 531 46.3
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.1e-123 448.0 536 44.8
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 2.3e-123 446.8 545 46.2
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 3.1e-123 446.4 530 45.1
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 1.2e-122 444.5 534 45.3
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 1.2e-122 444.5 538 45.4
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 1.5e-122 444.1 525 45.1
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 2.0e-122 443.7 545 43.7
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 4.4e-122 442.6 535 44.7
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 7.6e-122 441.8 527 47.1
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 9.9e-122 441.4 544 44.9
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 1.1e-120 438.0 528 46.8
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 4.1e-120 436.0 527 45.5
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 5.4e-120 435.6 524 44.5
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 7.1e-120 435.3 448 50.2
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 7.8e-119 431.8 529 43.9
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.3e-118 431.0 530 44.7
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 3.0e-118 429.9 536 45.7
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 3.9e-118 429.5 523 44.4
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 1.5e-117 427.6 534 45.7
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.5e-117 427.6 544 44.5
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.5e-117 427.6 537 43.0
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.5e-117 426.8 534 45.1
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 3.3e-117 426.4 524 44.8
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.3e-117 426.0 524 44.1
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 3.6e-116 422.9 528 46.0
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 3.6e-116 422.9 530 43.4
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 8.1e-116 421.8 533 43.7
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.1e-115 421.4 520 43.5
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 1.8e-115 420.6 527 43.1
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 4.0e-115 419.5 530 43.6
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 5.2e-115 419.1 528 45.6
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.3e-113 414.5 418 51.2
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 2.2e-113 413.7 529 43.9
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.9e-113 413.3 526 42.2
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 1.9e-112 410.6 547 40.6
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 9.3e-112 408.3 526 42.0
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.1e-111 407.1 526 42.0
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 6.0e-111 405.6 527 42.9
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-110 404.4 530 40.9
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-110 404.4 530 40.9
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.7e-110 404.1 539 40.3
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.1e-110 402.5 539 40.4
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 3.3e-109 399.8 527 44.6
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 7.3e-109 398.7 564 39.2
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 1.3e-108 397.9 535 44.9
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.6e-108 397.5 439 49.7
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 2.1e-108 397.1 541 42.1
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 2.8e-108 396.7 551 40.1
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.4e-107 394.4 522 40.4
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 3.2e-104 383.3 529 41.2
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 6.0e-103 379.0 577 40.2
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 1.7e-102 377.5 534 42.9
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 3.3e-101 373.2 537 42.1
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 3.3e-101 373.2 524 40.6
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 3.6e-100 369.8 532 40.8
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 3.4e-98 363.2 540 40.4
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 3.8e-97 359.8 541 41.2
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 1.1e-96 358.2 533 40.5
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 5.5e-96 355.9 541 39.7
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.0e-94 351.7 603 36.5
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 1.3e-94 351.3 530 40.4
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.8e-94 350.9 525 40.2
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.3e-92 344.7 528 38.8
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.2e-90 338.2 535 38.9
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.4e-90 336.7 539 39.3
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 7.6e-90 335.5 526 38.0
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 7.6e-90 335.5 526 38.0
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 7.6e-90 335.5 526 38.0
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 1.7e-89 334.3 527 38.3
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.1e-88 331.6 406 44.3
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 5.5e-88 329.3 527 38.1
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 3.3e-85 320.1 522 38.1
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.3e-81 308.1 525 36.6
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.3e-76 291.6 609 32.3
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.5e-74 283.1 501 36.5
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 1.1e-69 268.5 473 37.0
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.5e-66 258.1 329 43.5
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 2.0e-66 257.7 430 39.1
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.4e-64 251.5 539 33.0
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 2.1e-63 247.7 281 47.7
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 5.1e-62 243.0 303 40.6
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 3.3e-61 240.4 315 43.2
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.8e-60 237.3 300 43.0
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 3.1e-59 233.8 566 31.4
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.6e-58 230.7 227 52.0
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 2.5e-56 224.2 560 30.0
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 6.7e-54 216.1 323 39.6
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 1.8e-46 191.4 563 27.2
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 2.6e-45 187.6 561 27.8
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 1.4e-35 155.2 313 32.6
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 3.5e-34 150.6 360 28.1
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 1.9e-32 144.8 197 41.1
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 1.4e-27 128.6 303 29.7
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 4.1e-27 127.1 171 41.5
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 4.1e-19 100.5 125 43.2
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 3.3e-16 90.9 222 32.4
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.3e-16 90.9 92 47.8
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.6e-15 88.6 193 34.7
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 3.6e-15 87.4 295 25.1
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.2e-13 82.4 105 41.0
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.7e-12 77.4 127 33.9
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-11 75.9 105 42.9
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 5.4e-11 73.6 69 50.7
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-10 71.2 91 39.6
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 6.6e-09 66.6 47 63.8
Migut.K00095 Erythranthe guttata HOM05D001573 ORTHO05D001660 4.3e-08 63.9 321 23.4
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 7.3e-08 63.2 92 39.1
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.3e-08 63.2 184 26.1
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 9.5e-08 62.8 66 40.9
Migut.J01740 Erythranthe guttata HOM05D001573 ORTHO05D001660 1.6e-07 62.0 321 23.4
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-07 62.0 184 25.5
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 1.1e-06 59.3 276 22.8
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 1.8e-06 58.5 155 28.4
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 4.0e-06 57.4 78 32.1


User provided reference genes

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