Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 1.8e-162 575.9 290 100.0
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 2.9e-160 568.5 290 98.6
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 7.3e-148 527.3 290 90.3
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 7.6e-145 517.3 290 89.0
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 5.4e-143 511.1 290 88.3
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 4.6e-142 508.1 290 85.5
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 4.6e-142 508.1 290 86.9
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 7.8e-142 507.3 290 85.2
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 1.7e-141 506.1 290 84.8
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 3.0e-141 505.4 302 84.8
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 3.9e-141 505.0 290 86.9
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 6.6e-141 504.2 290 86.2
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 6.6e-141 504.2 290 85.2
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.1e-140 503.4 290 86.6
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 1.5e-140 503.1 290 85.5
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.5e-140 502.3 288 84.4
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 4.3e-140 501.5 288 84.7
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 9.6e-140 500.4 290 86.2
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 9.6e-140 500.4 289 85.8
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 1.2e-139 500.0 289 85.1
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 1.6e-139 499.6 287 85.4
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 2.8e-139 498.8 289 85.1
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 3.6e-139 498.4 289 84.4
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 8.1e-139 497.3 287 86.1
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.4e-138 496.5 289 84.1
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 1.4e-138 496.5 287 86.1
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.8e-138 496.1 290 85.2
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 1.8e-138 496.1 291 83.8
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 5.2e-138 494.6 290 82.4
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 5.2e-138 494.6 289 83.7
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 1.5e-137 493.0 290 84.1
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 2.0e-137 492.7 287 84.3
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 3.4e-137 491.9 289 82.7
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 3.4e-137 491.9 287 85.7
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 5.8e-137 491.1 290 81.7
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 5.8e-137 491.1 289 82.4
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 5.8e-137 491.1 290 82.1
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 9.9e-137 490.3 291 83.2
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 9.9e-137 490.3 289 83.0
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 1.3e-136 490.0 289 82.4
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.3e-136 490.0 289 83.0
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 2.2e-136 489.2 290 81.7
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.9e-136 488.8 289 81.7
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.9e-136 488.8 287 84.3
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.9e-136 488.8 287 84.3
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.8e-136 488.4 289 81.7
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 4.9e-136 488.0 289 84.1
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 6.4e-136 487.6 289 82.4
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 1.9e-135 486.1 290 80.7
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 1.9e-135 486.1 287 82.9
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 2.4e-135 485.7 289 81.7
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 3.2e-135 485.3 290 81.0
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 4.2e-135 485.0 289 81.3
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 4.2e-135 485.0 289 81.3
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 7.1e-135 484.2 289 82.0
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 7.1e-135 484.2 289 83.4
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.2e-134 483.4 287 81.2
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 1.2e-134 483.4 287 82.6
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.6e-134 483.0 290 82.1
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 2.1e-134 482.6 287 81.2
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 2.7e-134 482.3 287 82.9
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 4.6e-134 481.5 290 82.1
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 6.0e-134 481.1 286 81.5
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 6.0e-134 481.1 287 81.9
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 6.0e-134 481.1 287 82.6
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 7.8e-134 480.7 287 82.9
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 7.8e-134 480.7 289 81.3
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.0e-133 480.3 287 81.9
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.7e-133 479.6 290 81.4
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.7e-133 479.6 287 82.6
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 2.3e-133 479.2 289 81.0
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 2.3e-133 479.2 289 81.7
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 3.0e-133 478.8 289 81.0
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.9e-133 478.4 288 80.9
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 5.1e-133 478.0 289 80.6
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 5.1e-133 478.0 289 80.6
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 6.6e-133 477.6 289 81.0
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 6.6e-133 477.6 289 80.6
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 1.5e-132 476.5 289 79.6
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 1.5e-132 476.5 289 80.3
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 2.5e-132 475.7 290 81.4
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 3.3e-132 475.3 290 80.7
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 3.3e-132 475.3 289 79.9
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 7.3e-132 474.2 289 80.3
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 7.3e-132 474.2 289 80.3
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 7.3e-132 474.2 322 76.4
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 9.6e-132 473.8 289 78.9
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 9.6e-132 473.8 289 80.3
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 9.6e-132 473.8 293 82.3
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.6e-131 473.0 288 80.2
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.6e-131 473.0 287 80.5
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 2.8e-131 472.2 290 80.7
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 3.6e-131 471.9 289 78.5
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 3.6e-131 471.9 289 78.5
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 3.6e-131 471.9 289 78.5
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 3.6e-131 471.9 285 80.7
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.6e-131 471.9 291 81.1
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 6.2e-131 471.1 289 78.5
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 6.2e-131 471.1 289 78.5
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 8.1e-131 470.7 290 80.3
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 8.1e-131 470.7 288 80.6
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 5.3e-130 468.0 287 81.2
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 1.2e-129 466.8 307 77.9
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 3.4e-129 465.3 287 81.5
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 4.4e-129 464.9 306 78.8
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 9.9e-129 463.8 302 77.2
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 1.7e-128 463.0 290 77.9
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 1.7e-128 463.0 287 77.0
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 2.9e-128 462.2 301 78.7
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 4.9e-128 461.5 290 76.9
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.1e-127 460.3 293 79.2
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.4e-127 459.9 293 78.5
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 1.6e-126 456.4 287 76.0
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 2.1e-126 456.1 287 76.0
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 4.6e-126 454.9 292 77.7
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 4.6e-126 454.9 294 76.9
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 1.0e-125 453.8 290 76.2
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 1.1e-122 443.7 274 79.9
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 2.4e-122 442.6 290 74.1
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 2.4e-122 442.6 448 56.2
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 3.1e-122 442.2 261 85.1
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 4.5e-121 438.3 292 78.1
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 1.4e-119 433.3 287 73.9
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 6.0e-118 427.9 299 74.6
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 7.9e-118 427.6 290 74.5
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 1.0e-117 427.2 289 73.0
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.1e-116 423.7 289 72.0
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 1.6e-115 419.9 307 71.0
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 3.7e-115 418.7 291 71.5
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 4.8e-115 418.3 291 71.1
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 8.1e-115 417.5 232 88.4
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 8.1e-115 417.5 291 71.1
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.8e-114 416.4 290 69.7
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 6.5e-112 407.9 256 76.2
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 8.4e-112 407.5 290 68.3
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.9e-111 406.4 290 67.6
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 3.2e-111 405.6 283 70.3
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 5.5e-111 404.8 229 85.2
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 3.0e-109 399.1 293 68.6
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.1e-108 397.1 294 69.0
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 3.3e-108 395.6 257 75.9
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 3.1e-106 389.0 283 66.4
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 2.2e-104 382.9 232 79.7
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 8.2e-99 364.4 289 63.7
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 8.2e-99 364.4 298 65.8
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 7.7e-89 331.3 203 81.3
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 7.9e-86 321.2 285 59.3
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 5.0e-80 302.0 270 61.5
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 4.0e-77 292.4 287 53.0
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 3.1e-74 282.7 285 51.9
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 8.5e-72 274.6 282 50.0
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 1.2e-70 270.8 164 81.1
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 2.0e-68 263.5 281 48.0
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 2.3e-56 223.4 154 70.1
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 1.6e-54 217.2 113 91.2
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 3.0e-53 213.0 151 72.2
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 4.1e-50 202.6 140 72.9
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 2.9e-27 126.7 82 79.3
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.5e-23 114.4 80 73.8
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 1.9e-23 114.0 124 50.8
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 5.6e-23 112.5 80 73.8
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 6.2e-22 109.0 80 72.5
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 2.4e-21 107.1 63 84.1
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 3.1e-21 106.7 152 42.1
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 8.9e-21 105.1 75 70.7
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 7.6e-20 102.1 66 75.8
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 2.4e-18 97.1 85 61.2
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 3.5e-17 93.2 57 78.9
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 6.0e-17 92.4 70 67.1
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 1.5e-12 77.8 58 65.5
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 1.5e-12 77.8 58 65.5
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 6.4e-11 72.4 55 69.1
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 6.7e-08 62.4 32 90.6
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 8.7e-08 62.0 65 55.4
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 1.1e-07 61.6 41 63.4


User provided reference genes

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