Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 0.0e+00 1168.3 561 100.0
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 0.0e+00 1151.3 561 98.6
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 8.8e-275 949.9 552 80.6
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 5.9e-271 937.2 552 78.8
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 1.3e-270 936.0 562 79.0
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 6.5e-270 933.7 552 79.3
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 8.5e-270 933.3 551 78.4
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.9e-269 932.2 552 78.3
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 2.5e-269 931.8 552 78.8
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 5.5e-269 930.6 552 78.3
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 7.2e-269 930.2 552 78.3
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 9.4e-269 929.9 552 78.6
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 9.4e-269 929.9 552 78.3
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 2.1e-268 928.7 552 77.9
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 6.1e-268 927.2 552 78.3
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 8.0e-268 926.8 547 78.4
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 1.4e-267 926.0 552 77.5
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 1.4e-267 926.0 552 77.9
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.8e-267 925.6 554 78.3
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 1.8e-267 925.6 551 79.1
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 1.5e-266 922.5 551 78.6
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.8e-265 918.3 551 77.3
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 5.4e-264 914.1 543 78.3
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.7e-263 911.8 553 77.6
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.5e-263 911.4 536 80.4
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 4.5e-263 911.0 548 77.7
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 5.9e-263 910.6 548 78.5
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 1.3e-262 909.4 532 79.7
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.3e-262 908.7 548 78.6
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.9e-262 908.3 523 81.5
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 5.0e-262 907.5 559 77.1
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 6.6e-262 907.1 560 76.2
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.5e-261 905.2 542 78.8
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 5.6e-261 904.0 546 76.6
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 5.6e-261 904.0 551 75.9
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 5.6e-261 904.0 552 77.5
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 7.2e-261 903.7 531 79.8
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 7.2e-261 903.7 552 76.8
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 9.5e-261 903.3 552 76.8
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.8e-260 901.7 542 77.7
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 8.0e-260 900.2 532 79.7
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 1.8e-259 899.0 563 74.8
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 5.2e-259 897.5 535 78.3
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 8.9e-259 896.7 538 78.3
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.2e-258 896.3 538 77.9
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 2.0e-258 895.6 550 75.8
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 2.6e-258 895.2 568 74.5
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 9.8e-258 893.3 551 75.1
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 2.4e-256 888.6 551 76.2
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.4e-256 888.6 552 74.3
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 4.1e-256 887.9 567 73.9
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 5.4e-256 887.5 542 76.4
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 7.0e-256 887.1 560 74.8
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 7.0e-256 887.1 547 74.8
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 1.2e-255 886.3 552 75.2
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 2.0e-255 885.6 555 75.0
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 2.7e-255 885.2 574 73.5
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 3.5e-255 884.8 556 74.6
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 5.9e-255 884.0 542 76.4
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 7.8e-255 883.6 543 76.8
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 1.3e-254 882.9 554 75.3
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 3.0e-254 881.7 551 73.3
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 2.5e-253 878.6 556 74.3
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 4.3e-253 877.9 551 74.8
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 9.5e-253 876.7 549 75.4
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 9.5e-253 876.7 557 74.0
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 3.6e-252 874.8 551 73.9
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 2.6e-250 868.6 527 78.2
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 2.2e-249 865.5 550 72.5
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 4.1e-248 861.3 551 73.0
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 7.0e-248 860.5 563 71.9
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 7.0e-248 860.5 517 78.3
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 1.6e-247 859.4 549 75.2
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.0e-247 859.0 544 73.3
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 2.7e-247 858.6 542 74.7
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.5e-247 858.2 551 74.4
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 1.0e-246 856.7 565 71.0
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.3e-246 856.3 554 72.4
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 1.7e-246 855.9 560 73.0
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.7e-246 855.9 550 71.6
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.7e-246 855.9 548 73.0
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 5.0e-246 854.4 533 75.6
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 8.6e-246 853.6 544 73.0
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 8.6e-246 853.6 561 72.2
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 5.6e-245 850.9 549 72.7
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.6e-244 849.4 552 73.6
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.1e-244 849.0 562 71.2
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 3.6e-244 848.2 533 75.2
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.4e-243 846.3 550 72.4
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 3.1e-243 845.1 577 70.0
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 8.9e-243 843.6 554 73.5
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 1.2e-242 843.2 542 74.4
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 2.6e-242 842.0 545 72.7
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 3.4e-242 841.6 535 73.5
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 1.3e-241 839.7 545 71.7
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 1.6e-239 832.8 552 72.1
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 3.5e-239 831.6 547 72.4
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 3.5e-239 831.6 547 72.6
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 3.5e-239 831.6 547 72.4
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 6.0e-239 830.9 550 71.5
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 1.0e-238 830.1 550 70.9
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.0e-238 830.1 547 71.7
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.3e-238 829.7 547 72.6
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 5.1e-238 827.8 550 71.1
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 5.1e-238 827.8 550 71.1
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 6.6e-238 827.4 550 71.3
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 8.6e-238 827.0 550 70.9
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.1e-237 826.6 532 74.6
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 1.4e-235 819.7 551 71.0
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 3.1e-235 818.5 553 70.5
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 3.7e-233 811.6 512 75.0
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.4e-232 808.9 541 73.0
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.9e-229 799.3 518 72.8
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 3.3e-229 798.5 544 70.6
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 4.0e-227 791.6 495 76.4
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 2.4e-224 782.3 543 70.3
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.7e-223 778.9 548 68.8
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 2.2e-217 759.2 518 71.0
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 1.4e-216 756.5 521 70.6
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.5e-215 751.9 497 72.4
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 1.9e-213 746.1 566 64.7
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.6e-213 744.6 551 66.4
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 9.3e-208 727.2 554 65.0
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 2.1e-199 699.5 575 62.3
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.3e-198 696.8 485 69.5
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.5e-197 693.3 589 61.0
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 9.6e-197 690.6 580 61.9
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 3.4e-194 682.2 579 61.0
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 3.3e-189 665.6 416 77.9
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 5.7e-141 505.4 330 73.0
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 6.6e-137 491.9 312 74.7
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.5e-136 490.0 278 81.7
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 6.2e-127 458.8 570 48.6
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.4e-126 457.6 346 64.2
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 5.8e-125 452.2 263 82.9
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 3.9e-121 439.5 339 66.1
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.2e-109 401.4 294 68.7
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.2e-101 374.8 214 75.2
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.1e-97 359.4 217 79.7
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.1e-91 341.7 287 61.7
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 1.1e-86 325.1 292 54.5
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 5.3e-78 296.2 563 33.0
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.0e-77 294.3 227 64.8
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 1.7e-76 291.2 198 72.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.6e-74 283.5 201 69.7
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.8e-65 254.6 145 76.6
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 9.1e-62 242.3 450 31.8
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 6.1e-50 203.0 227 44.9
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.4e-41 175.3 123 61.8
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 6.5e-36 156.4 126 57.9
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.6e-32 144.4 102 60.8
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 7.8e-29 132.9 106 58.5
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 1.7e-28 131.7 92 66.3
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 5.2e-25 120.2 100 57.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 3.2e-22 110.9 81 60.5
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.5e-21 107.5 54 83.3
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 1.0e-20 105.9 116 49.1
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.3e-15 89.0 54 79.6
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 2.8e-10 71.2 52 53.8
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 4.4e-08 63.9 43 69.8
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 3.7e-07 60.8 69 36.2
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 3.7e-07 60.8 63 39.7
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 2.4e-06 58.2 68 36.8
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 2.4e-06 58.2 68 36.8
Peaxi162Scf00038g02344 Petunia axillaris HOM05D000440 ORTHO05D008998 2.4e-06 58.2 90 32.2
FAN23G2234 Fragaria x ananassa HOM05D012452 ORTHO05D017950 4.1e-06 57.4 68 36.8
FAN28G2875 Fragaria x ananassa HOM05D012452 ORTHO05D017950 4.1e-06 57.4 68 36.8
COL.COLO4_36026 Corchorus olitorius HOM05D000082 ORTHO05D000038 5.4e-06 57.0 53 37.7
FvH4_1g03372 Fragaria vesca HOM05D012452 ORTHO05D017950 5.4e-06 57.0 68 36.8
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 5.4e-06 57.0 56 39.3
Thecc.04G083500 Theobroma cacao HOM05D000082 ORTHO05D000038 7.1e-06 56.6 51 41.2
Ciclev10023831m.g Citrus clementina HOM05D000082 ORTHO05D000038 9.2e-06 56.2 53 43.4
Duzib084G1253 Durio zibethinus HOM05D000082 ORTHO05D000038 9.2e-06 56.2 52 40.4
Hma1.2p1_0256F.1_g103320 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 9.2e-06 56.2 57 35.1
Os07g0631200 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 9.2e-06 56.2 52 44.2
Peaxi162Scf00811g00039 Petunia axillaris HOM05D000082 ORTHO05D000038 9.2e-06 56.2 56 41.1
Peaxi162Scf00811g00311 Petunia axillaris HOM05D000082 ORTHO05D000038 9.2e-06 56.2 56 41.1


User provided reference genes

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