Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 0.0e+00 1081.6 523 100.0
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 2.9e-280 968.0 523 90.8
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 1.5e-239 832.8 497 78.7
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.3e-237 825.5 492 79.1
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 3.2e-234 815.1 491 77.4
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 9.5e-231 803.5 489 76.5
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 3.6e-230 801.6 490 77.3
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 3.6e-230 801.6 490 77.6
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 8.1e-230 800.4 504 74.8
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 1.1e-229 800.0 491 75.8
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 3.1e-229 798.5 489 75.9
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 4.0e-229 798.1 490 76.5
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 5.2e-229 797.7 490 76.7
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 4.4e-228 794.7 486 76.3
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 4.4e-228 794.7 480 77.5
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 5.8e-228 794.3 484 76.0
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 1.7e-227 792.7 512 74.0
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 2.2e-227 792.3 490 76.1
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 2.2e-227 792.3 490 76.3
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 2.9e-227 792.0 486 76.7
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 1.1e-226 790.0 506 74.9
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 1.9e-226 789.3 485 76.9
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 3.2e-226 788.5 490 74.7
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 9.2e-226 786.9 490 74.5
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 1.2e-225 786.6 485 76.3
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 1.6e-225 786.2 494 74.9
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 3.5e-225 785.0 490 74.7
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 6.0e-225 784.3 492 75.2
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 6.0e-225 784.3 493 76.3
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 1.0e-224 783.5 501 74.9
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 1.0e-224 783.5 493 75.9
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 2.3e-224 782.3 514 72.4
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 3.0e-224 781.9 491 74.7
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 8.6e-224 780.4 493 74.0
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 8.6e-224 780.4 494 73.1
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.5e-223 779.6 493 75.7
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 1.9e-223 779.2 496 73.6
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 3.6e-222 775.0 522 71.3
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.1e-221 773.5 493 73.8
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 1.4e-221 773.1 490 74.1
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 5.2e-221 771.2 491 74.1
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 2.9e-219 765.4 515 70.5
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 4.9e-219 764.6 488 74.2
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 6.4e-219 764.2 495 72.7
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 8.4e-219 763.8 491 73.5
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 1.4e-218 763.1 496 73.0
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 3.2e-218 761.9 493 72.4
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 5.4e-218 761.1 488 74.0
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 2.1e-217 759.2 482 73.7
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 2.7e-217 758.8 518 69.7
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 3.5e-217 758.4 490 73.3
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 7.8e-217 757.3 502 71.7
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 7.8e-217 757.3 551 66.8
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 7.8e-217 757.3 483 74.3
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 7.8e-217 757.3 477 75.1
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 1.0e-216 756.9 484 73.6
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 5.1e-216 754.6 494 73.7
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 6.6e-216 754.2 483 73.9
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 6.6e-216 754.2 532 69.0
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 5.6e-215 751.1 455 77.8
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 2.8e-214 748.8 456 76.5
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 2.8e-214 748.8 502 71.1
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 4.7e-214 748.0 484 72.3
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 8.1e-214 747.3 483 72.7
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 9.0e-213 743.8 483 72.9
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 1.5e-212 743.0 487 71.9
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 1.5e-212 743.0 499 70.7
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 1.6e-209 733.0 488 70.9
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 3.5e-209 731.9 501 69.1
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 3.5e-209 731.9 514 69.5
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 3.9e-208 728.4 490 72.0
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 6.6e-208 727.6 474 72.8
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 8.7e-208 727.2 572 63.8
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 5.6e-207 724.5 442 77.8
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 1.1e-205 720.3 527 66.6
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 1.8e-205 719.5 525 66.1
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 2.9e-203 712.2 470 73.0
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 8.4e-203 710.7 502 70.1
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 5.6e-199 698.0 487 68.2
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 2.1e-198 696.0 455 70.1
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 3.7e-198 695.3 503 68.0
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 6.9e-197 691.0 493 67.7
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 1.1e-194 683.7 506 66.6
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 4.3e-191 671.8 481 65.3
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 7.4e-191 671.0 498 66.7
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 1.4e-189 666.8 507 65.1
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 3.3e-183 645.6 486 63.6
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 2.6e-180 636.0 481 61.7
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 1.9e-178 629.8 495 61.2
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.8e-176 623.2 484 64.9
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 3.9e-176 622.1 485 61.4
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 1.7e-174 616.7 490 62.9
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 1.3e-171 607.1 397 73.3
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 1.4e-170 603.6 394 73.4
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 1.8e-168 596.7 387 73.6
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 3.0e-168 595.9 391 74.2
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 8.5e-163 577.8 387 71.1
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 1.2e-161 573.9 476 58.6
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 3.0e-160 569.3 394 69.5
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.5e-154 550.4 364 72.3
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 4.0e-152 542.3 393 66.4
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 1.6e-148 530.4 482 54.8
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 6.1e-145 518.5 319 73.7
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 1.3e-134 484.2 486 53.9
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 8.3e-134 481.5 355 66.8
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 3.0e-128 463.0 454 52.2
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 4.9e-126 455.7 252 83.3
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 1.1e-125 454.5 368 63.0
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 2.0e-124 450.3 438 50.2
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 1.5e-122 444.1 289 71.6
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 4.3e-122 442.6 387 56.6
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.1e-117 427.9 282 71.3
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 6.2e-105 385.6 350 56.6
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 1.1e-90 338.2 186 79.0
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 3.7e-73 280.0 151 84.8
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 2.1e-68 264.2 503 36.2
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 7.0e-48 196.1 105 81.0
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.2e-44 185.3 94 84.0
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 5.7e-34 149.8 70 94.3
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 4.1e-32 143.7 74 85.1
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 2.7e-31 141.0 93 66.7
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 5.0e-30 136.7 213 36.6
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 8.5e-30 136.0 108 63.0
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 2.0e-26 124.8 132 53.0
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 5.9e-23 113.2 205 33.2
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.2e-20 105.5 100 54.0
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 8.9e-19 99.4 70 67.1
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 1.5e-13 82.0 56 75.0
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 5.8e-10 70.1 50 66.0


User provided reference genes

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