Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 5.5e-209 730.7 366 100.0
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-133 479.9 402 65.7
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 4.3e-105 385.6 375 58.1
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 6.1e-75 285.4 415 45.5
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 8.0e-75 285.0 414 45.4
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 1.0e-74 284.6 421 44.4
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 1.4e-74 284.3 417 45.1
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 1.4e-74 284.3 418 45.2
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 2.3e-74 283.5 420 45.7
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 5.2e-74 282.3 418 45.0
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 6.7e-74 282.0 418 45.7
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.2e-73 281.2 418 45.5
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 1.2e-73 281.2 419 44.4
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 2.0e-73 280.4 419 44.2
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 2.6e-73 280.0 417 43.9
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 4.4e-73 279.3 419 44.4
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 9.7e-73 278.1 421 44.7
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 9.7e-73 278.1 419 44.2
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.7e-72 277.3 417 43.9
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.7e-72 277.3 417 43.9
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 2.2e-72 276.9 419 43.9
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 2.8e-72 276.6 419 44.4
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 2.8e-72 276.6 412 43.9
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 3.7e-72 276.2 417 44.1
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 3.7e-72 276.2 419 43.7
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 3.7e-72 276.2 419 43.7
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 8.2e-72 275.0 421 43.7
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 8.2e-72 275.0 421 43.7
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 1.1e-71 274.6 420 43.8
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 1.4e-71 274.2 419 43.4
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 1.8e-71 273.9 417 43.4
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 1.8e-71 273.9 419 43.4
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 1.8e-71 273.9 419 43.4
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 4.1e-71 272.7 417 44.1
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 5.3e-71 272.3 419 43.2
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 7.0e-71 271.9 415 42.7
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 9.1e-71 271.6 419 43.0
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 9.1e-71 271.6 421 43.9
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 9.1e-71 271.6 419 43.2
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 1.2e-70 271.2 419 42.2
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 1.6e-70 270.8 419 42.2
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 1.6e-70 270.8 419 42.2
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 1.6e-70 270.8 415 44.8
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 2.0e-70 270.4 419 41.8
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 2.7e-70 270.0 410 44.9
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 2.7e-70 270.0 419 42.7
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 3.5e-70 269.6 414 43.7
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 3.5e-70 269.6 410 44.1
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 4.5e-70 269.2 419 43.0
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 4.5e-70 269.2 419 42.2
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 4.5e-70 269.2 421 43.2
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 5.9e-70 268.9 421 42.5
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 5.9e-70 268.9 419 42.7
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 7.7e-70 268.5 419 42.0
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 7.7e-70 268.5 415 43.1
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 7.7e-70 268.5 412 43.7
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 1.0e-69 268.1 419 43.0
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.0e-69 268.1 421 42.8
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 1.0e-69 268.1 410 42.7
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 1.0e-69 268.1 419 43.0
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 1.3e-69 267.7 412 42.7
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 1.7e-69 267.3 421 42.5
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 2.2e-69 266.9 419 42.2
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 2.2e-69 266.9 414 42.3
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 2.2e-69 266.9 419 43.0
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 2.9e-69 266.5 419 41.8
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 2.9e-69 266.5 429 43.8
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 5.0e-69 265.8 419 41.5
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 5.0e-69 265.8 419 41.5
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 5.0e-69 265.8 419 41.5
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 5.0e-69 265.8 419 41.5
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 5.0e-69 265.8 419 41.5
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 5.0e-69 265.8 419 42.5
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 6.5e-69 265.4 430 41.4
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.5e-69 265.4 429 43.6
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 8.5e-69 265.0 419 41.5
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 8.5e-69 265.0 419 41.8
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 8.5e-69 265.0 419 41.8
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 8.5e-69 265.0 419 41.5
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 1.1e-68 264.6 419 42.2
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 1.1e-68 264.6 419 41.8
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 1.5e-68 264.2 413 42.6
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 1.5e-68 264.2 417 42.2
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-68 264.2 425 44.0
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 1.5e-68 264.2 412 41.7
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 1.5e-68 264.2 419 41.8
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 1.9e-68 263.8 419 43.0
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 1.9e-68 263.8 433 42.0
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.2e-68 262.7 408 42.9
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 4.2e-68 262.7 423 44.0
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 5.5e-68 262.3 408 42.2
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 5.5e-68 262.3 417 41.2
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 7.2e-68 261.9 414 42.5
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 9.4e-68 261.5 417 42.0
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 1.2e-67 261.2 421 42.0
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 1.6e-67 260.8 417 42.0
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 1.6e-67 260.8 380 46.1
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 2.1e-67 260.4 419 41.1
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 2.7e-67 260.0 419 41.1
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.6e-67 259.6 409 42.1
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 3.6e-67 259.6 454 41.6
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 1.8e-66 257.3 424 40.6
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 3.0e-66 256.5 419 42.2
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 8.8e-66 255.0 406 41.4
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.2e-65 254.6 382 43.7
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 7.5e-65 251.9 414 39.9
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 1.7e-64 250.8 409 40.3
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.8e-64 249.2 465 40.2
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 8.3e-64 248.4 417 38.1
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 3.1e-63 246.5 407 41.3
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.1e-63 246.1 465 40.0
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.4e-63 245.7 409 40.8
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 1.1e-60 238.0 430 39.5
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 3.2e-60 236.5 409 38.6
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 9.5e-60 235.0 365 42.5
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 3.6e-59 233.0 392 37.5
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 4.7e-59 232.6 386 39.4
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 6.1e-59 232.3 409 38.1
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 8.0e-59 231.9 407 37.8
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 8.8e-58 228.4 405 38.5
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 2.6e-57 226.9 364 40.1
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 7.0e-55 218.8 380 39.7
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 1.7e-53 214.2 328 41.5
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 1.2e-51 208.0 376 35.6
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-51 208.0 389 37.3
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.0e-50 204.9 405 35.8
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-50 204.5 368 37.0
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 3.0e-50 203.4 390 35.6
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 3.0e-50 203.4 389 36.0
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.3e-48 198.0 331 37.2
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.2e-48 197.2 331 37.2
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.2e-48 197.2 331 37.2
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 2.2e-48 197.2 358 38.0
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 5.4e-47 192.6 347 36.9
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 2.5e-44 183.7 415 32.5
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.6e-43 181.0 299 37.5
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.8e-42 177.6 334 39.8
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.8e-41 171.8 414 33.1
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 6.6e-37 159.1 144 58.3
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 9.5e-28 128.6 265 39.2
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 3.4e-25 120.2 265 37.4
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-20 103.6 271 31.4
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.3e-20 103.6 143 43.4
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.3e-20 102.4 258 32.2
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.6e-20 102.1 94 52.1
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 3.6e-19 100.1 409 25.9
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 4.0e-18 96.7 145 40.0
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.2e-14 85.1 114 44.7
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.2e-14 85.1 243 28.0
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 7.3e-12 75.9 101 45.5
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.2e-08 64.3 210 27.6
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.4e-07 61.6 96 43.8


User provided reference genes

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