Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3774 Papaver somniferum HOM05D003534 ORTHO05D004911 3.5e-146 521.5 256 100.0
PSO478G1590 Papaver somniferum HOM05D000040 ORTHO05D000267 5.5e-99 364.8 242 78.5
PSO170G1266 Papaver somniferum HOM05D034905 ORTHO05D004911 1.0e-84 317.4 242 68.2
PSO170G1701 Papaver somniferum HOM05D003534 ORTHO05D004911 1.0e-84 317.4 242 68.2
PSO063G5362 Papaver somniferum HOM05D003534 ORTHO05D004911 4.4e-80 302.0 168 88.7
PSO541G3604 Papaver somniferum HOM05D003534 ORTHO05D004911 3.3e-59 232.6 272 47.8
PSO675G2831 Papaver somniferum HOM05D003534 ORTHO05D004911 3.3e-59 232.6 272 47.8
PSO675G9373 Papaver somniferum HOM05D003534 ORTHO05D004911 1.6e-58 230.3 260 48.1
MBI16_g05475_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D004911 7.1e-54 214.9 261 44.4
Nn3g20273 Nelumbo nucifera HOM05D003534 ORTHO05D004911 1.6e-53 213.8 261 43.7
Sopen11g010770 Solanum pennellii HOM05D003534 ORTHO05D004911 6.0e-53 211.8 265 42.3
TAR376G0939 Trochodendron aralioides HOM05D003534 ORTHO05D004911 1.3e-52 210.7 261 43.7
Nn8g40768 Nelumbo nucifera HOM05D003534 ORTHO05D004911 3.0e-52 209.5 261 43.3
Solyc11g020810.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 3.0e-52 209.5 266 42.5
Lj4C693T2 Lonicera japonica HOM05D003534 ORTHO05D004911 3.9e-52 209.1 260 43.1
THA.LOC104807735 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 5.1e-52 208.8 268 41.4
Rhsim11G0178800 Rhododendron simsii HOM05D003534 ORTHO05D004911 6.6e-52 208.4 261 44.1
PGSC0003DMG400009279 Solanum tuberosum HOM05D003534 ORTHO05D004911 8.7e-52 208.0 266 42.1
Solyc11g020820.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 1.5e-51 207.2 266 41.7
CAN.G259.5 Capsicum annuum HOM05D003534 ORTHO05D004911 5.6e-51 205.3 265 41.9
CDE06G1392 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 5.6e-51 205.3 266 41.4
THA.LOC104804130 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 7.3e-51 204.9 269 40.9
CSS0034094 Camellia sinensis var. sinensis HOM05D003534 ORTHO05D004911 1.6e-50 203.8 261 42.9
Dinv23505 Davidia involucrata HOM05D003534 ORTHO05D004911 1.6e-50 203.8 266 41.7
Sc22g0003200 Simmondsia chinensis HOM05D003534 ORTHO05D004911 1.6e-50 203.8 261 42.9
Aa31sc389G50 Aethionema arabicum HOM05D003534 ORTHO05D004911 2.8e-50 203.0 268 41.4
SEGI_39025 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 2.8e-50 203.0 263 43.3
SEGI_39659 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 2.8e-50 203.0 263 43.3
CDE08G0557 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 3.6e-50 202.6 266 41.0
QL11p044502 Quercus lobata HOM05D003534 ORTHO05D004911 3.6e-50 202.6 263 41.4
Eucgr.I01280 Eucalyptus grandis HOM05D003534 ORTHO05D004911 4.7e-50 202.2 267 40.8
Peaxi162Scf00391g00525 Petunia axillaris HOM05D003534 ORTHO05D004911 4.7e-50 202.2 266 42.5
COL.COLO4_25956 Corchorus olitorius HOM05D003534 ORTHO05D004911 6.2e-50 201.8 252 40.9
CANSAT01G2206 Cannabis sativa HOM05D003534 ORTHO05D004911 8.1e-50 201.4 268 40.3
Actinidia00534 Actinidia chinensis HOM05D003534 ORTHO05D004911 3.1e-49 199.5 261 42.9
HanXRQChr12g0376181 Helianthus annuus HOM05D003534 ORTHO05D004911 3.1e-49 199.5 262 43.1
Nitab4.5_0003010g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 3.1e-49 199.5 266 41.7
ATR0579G045 Amborella trichopoda HOM05D003534 ORTHO05D004911 4.0e-49 199.1 262 41.6
Nitab4.5_0000167g0310 Nicotiana tabacum HOM05D003534 ORTHO05D004911 5.3e-49 198.7 266 41.7
Sopen11g010760 Solanum pennellii HOM05D003534 ORTHO05D004911 5.3e-49 198.7 259 42.1
ATR0568G003 Amborella trichopoda HOM05D003534 ORTHO05D004911 9.0e-49 198.0 261 42.9
FvH4_2g09160 Fragaria vesca HOM05D003534 ORTHO05D004911 9.0e-49 198.0 269 40.5
Os05g0567400 Oryza sativa ssp. japonica HOM05D003534 ORTHO05D004911 9.0e-49 198.0 266 41.4
Migut.N01247 Erythranthe guttata HOM05D003534 ORTHO05D004911 1.2e-48 197.6 261 39.8
Oeu011084.1 Olea europaea HOM05D003534 ORTHO05D004911 1.2e-48 197.6 266 41.0
Cc02_g17370 Coffea canephora HOM05D003534 ORTHO05D004911 1.5e-48 197.2 261 41.0
FAN20G2815 Fragaria x ananassa HOM05D003534 ORTHO05D004911 2.0e-48 196.8 269 40.5
MD10G1073000 Malus domestica HOM05D003534 ORTHO05D004911 2.0e-48 196.8 269 40.5
FAN15G3506 Fragaria x ananassa HOM05D003534 ORTHO05D004911 2.6e-48 196.4 269 40.5
FAN27G1894 Fragaria x ananassa HOM05D003534 ORTHO05D004911 2.6e-48 196.4 269 40.5
Lj3g0020150 Lotus japonicus HOM05D003534 ORTHO05D004911 2.6e-48 196.4 261 41.4
SGA_v2.0_scaffold58G20518 Striga asiatica HOM05D003534 ORTHO05D004911 2.6e-48 196.4 261 40.6
Aqoxy3G00729 Aquilegia oxysepala HOM05D003534 ORTHO05D004911 3.4e-48 196.1 269 41.3
Cfa004983 Carpinus fangiana HOM05D003534 ORTHO05D004911 3.4e-48 196.1 271 38.7
Gohir.D02G216500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 3.4e-48 196.1 266 38.0
MSTRG.27693 Avicennia marina HOM05D003534 ORTHO05D004911 4.4e-48 195.7 264 41.7
Carub.0007s1523 Capsella rubella HOM05D003534 ORTHO05D004911 5.8e-48 195.3 268 41.4
AUR62038347 Chenopodium quinoa HOM05D003534 ORTHO05D004911 5.8e-48 195.3 261 42.1
Duzib132G0318 Durio zibethinus HOM05D003534 ORTHO05D004911 5.8e-48 195.3 268 39.6
FAN24G0084 Fragaria x ananassa HOM05D003534 ORTHO05D004911 5.8e-48 195.3 269 40.1
Gohir.A03G195500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 5.8e-48 195.3 266 38.3
Gorai.005G244600 Gossypium raimondii HOM05D003534 ORTHO05D004911 5.8e-48 195.3 266 38.0
Manes.04G089300 Manihot esculenta HOM05D003534 ORTHO05D004911 5.8e-48 195.3 267 41.9
Potri.009G118400 Populus trichocarpa HOM05D003534 ORTHO05D004911 5.8e-48 195.3 270 40.0
Sed0008343 Sechium edule HOM05D003534 ORTHO05D004911 5.8e-48 195.3 263 39.9
ClCG11G004310 Citrullus lanatus HOM05D003534 ORTHO05D004911 7.6e-48 194.9 263 39.5
ECA234G0458 Erigeron canadensis HOM05D003534 ORTHO05D004911 9.9e-48 194.5 261 40.6
Thhalv10024417m.g Eutrema salsugineum HOM05D003534 ORTHO05D004911 9.9e-48 194.5 271 41.0
Prupe.8G094400 Prunus persica HOM05D003534 ORTHO05D004911 9.9e-48 194.5 269 40.1
MD05G1064300 Malus domestica HOM05D003534 ORTHO05D004911 1.7e-47 193.7 269 40.5
EL10Ac2g03296 Beta vulgaris HOM05D003534 ORTHO05D004911 2.2e-47 193.4 262 40.8
AUR62037043 Chenopodium quinoa HOM05D003534 ORTHO05D004911 2.2e-47 193.4 260 42.3
Ca_20885_v3 Cicer arietinum L. HOM05D003534 ORTHO05D004911 2.2e-47 193.4 261 39.5
Lsat_1_v5_gn_5_119261 Lactuca sativa HOM05D003534 ORTHO05D004911 2.9e-47 193.0 258 39.9
Psat7g184360 Pisum sativum HOM05D003534 ORTHO05D004911 2.9e-47 193.0 261 41.0
Sabra09G0090700 Salix brachista HOM05D003534 ORTHO05D004911 2.9e-47 193.0 268 39.6
GSVIVG01023801001 Vitis vinifera HOM05D003534 ORTHO05D004911 2.9e-47 193.0 266 40.2
Medtr4g078640 Medicago truncatula HOM05D003534 ORTHO05D004911 4.9e-47 192.2 261 39.1
Hund20114 Selenicereus undatus HOM05D003534 ORTHO05D004911 6.4e-47 191.8 260 41.5
vmacro02092 Vaccinium macrocarpon HOM05D003534 ORTHO05D004911 1.4e-46 190.7 306 38.2
TWI79G0037 Tripterygium wilfordii HOM05D003534 ORTHO05D004911 1.9e-46 190.3 263 38.8
BolC7t45937H Brassica oleracea HOM05D003534 ORTHO05D004911 2.4e-46 189.9 268 39.2
RcHm_v2.0_Chr6g0265021 Rosa chinensis HOM05D003534 ORTHO05D004911 2.4e-46 189.9 269 40.1
Thecc.02G083000 Theobroma cacao HOM05D003534 ORTHO05D004911 2.4e-46 189.9 266 38.7
Ah.11g039060 Amaranthus hybridus HOM05D003534 ORTHO05D004911 3.2e-46 189.5 261 42.5
VMungo1127G1107 Vigna mungo HOM05D003534 ORTHO05D004911 3.2e-46 189.5 261 38.3
AL6G48970 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 4.2e-46 189.1 271 40.2
A03p56220 Brassica napus HOM05D003534 ORTHO05D004911 4.2e-46 189.1 268 39.6
C07p54510 Brassica napus HOM05D003534 ORTHO05D004911 4.2e-46 189.1 268 39.2
BraA03t14692Z Brassica rapa HOM05D003534 ORTHO05D004911 4.2e-46 189.1 268 39.6
Nitab4.5_0007066g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 4.2e-46 189.1 260 40.4
CiPaw.05G066400 Carya illinoinensis HOM05D003534 ORTHO05D004911 5.4e-46 188.7 263 39.2
Glyma.11G116800 Glycine max HOM05D003534 ORTHO05D004911 5.4e-46 188.7 266 38.0
A08p21010 Brassica napus HOM05D003534 ORTHO05D004911 7.1e-46 188.3 271 39.1
MELO3C023306.2 Cucumis melo HOM05D003534 ORTHO05D004911 7.1e-46 188.3 261 39.1
Phvul.011G044300 Phaseolus vulgaris HOM05D003534 ORTHO05D004911 9.3e-46 188.0 261 38.3
BcaC07g38209 Brassica carinata HOM05D003534 ORTHO05D004911 1.2e-45 187.6 271 39.1
BolC8t48630H Brassica oleracea HOM05D003534 ORTHO05D004911 1.2e-45 187.6 271 39.1
CARHR233180 Cardamine hirsuta HOM05D003534 ORTHO05D004911 1.2e-45 187.6 271 38.7
PGR142G3854 Punica granatum HOM05D003534 ORTHO05D004911 1.2e-45 187.6 268 38.4
SalBow3G2606 Salvia bowleyana HOM05D003534 ORTHO05D004911 1.2e-45 187.6 261 39.8
DCAR_001567 Daucus carota HOM05D003534 ORTHO05D004911 1.6e-45 187.2 294 37.1
Sp7g23760 Schrenkiella parvula HOM05D003534 ORTHO05D004911 1.6e-45 187.2 271 39.1
AL7G27310 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 2.1e-45 186.8 268 39.2
unitig_21.g20784 Utricularia gibba HOM05D003534 ORTHO05D004911 2.1e-45 186.8 261 39.8
C08p09620 Brassica napus HOM05D003534 ORTHO05D004911 2.7e-45 186.4 271 38.7
Cpa.g.c31087 Carica papaya HOM05D003534 ORTHO05D004911 2.7e-45 186.4 266 37.6
Lalb_Chr03g0025601 Lupinus albus HOM05D003534 ORTHO05D004911 2.7e-45 186.4 261 37.9
Nitab4.5_0000231g0480 Nicotiana tabacum HOM05D003534 ORTHO05D004911 2.7e-45 186.4 261 40.6
AT4G25730 Arabidopsis thaliana HOM05D003534 ORTHO05D004911 3.5e-45 186.0 268 38.8
Glyma.12G042600 Glycine max HOM05D003534 ORTHO05D004911 3.5e-45 186.0 261 38.3
BraA08t34053Z Brassica rapa HOM05D003534 ORTHO05D004911 4.6e-45 185.7 279 38.4
CANSAT35G1090 Cannabis sativa HOM05D003534 ORTHO05D004911 4.6e-45 185.7 266 38.7
CsaV3_2G014840 Cucumis sativus L. HOM05D003534 ORTHO05D004911 6.0e-45 185.3 267 39.0
TPR.G22546 Trifolium pratense HOM05D003534 ORTHO05D004911 7.8e-45 184.9 262 38.2
Zm00001eb296160 Zea mays HOM05D003534 ORTHO05D004911 7.8e-45 184.9 266 38.3
Zm00001eb343980 Zea mays HOM05D003534 ORTHO05D004911 7.8e-45 184.9 266 38.3
Cpa.g.sc62.164 Carica papaya HOM05D003534 ORTHO05D004911 1.0e-44 184.5 266 37.2
Solyc10g046930.3 Solanum lycopersicum HOM05D003534 ORTHO05D004911 1.0e-44 184.5 264 39.0
Sopen10g016730 Solanum pennellii HOM05D003534 ORTHO05D004911 1.0e-44 184.5 264 38.6
Sopen10g016790 Solanum pennellii HOM05D003534 ORTHO05D004911 1.0e-44 184.5 264 38.6
arahy.Tifrunner.gnm1.ann1.32LR34 Arachis hypogaea HOM05D003534 ORTHO05D004911 1.3e-44 184.1 261 38.3
arahy.Tifrunner.gnm1.ann1.HU7T3D Arachis hypogaea HOM05D003534 ORTHO05D004911 1.3e-44 184.1 261 38.3
PGSC0003DMG400031553 Solanum tuberosum HOM05D003534 ORTHO05D004911 1.3e-44 184.1 263 38.8
PGSC0003DMG400020972 Solanum tuberosum HOM05D003534 ORTHO05D004911 1.9e-43 180.3 264 39.0
Lalb_Chr01g0002481 Lupinus albus HOM05D003534 ORTHO05D004911 3.3e-43 179.5 261 37.5
Pp3c2_28180 Physcomitrium patens HOM05D003534 ORTHO05D004911 4.3e-43 179.1 271 37.6
Pp3c2_28182 Physcomitrium patens HOM05D003534 ORTHO05D004911 4.3e-43 179.1 271 37.6
HPP92_017536 Vanilla planifolia HOM05D003534 ORTHO05D004911 1.6e-42 177.2 264 39.0
AUR62041501 Chenopodium quinoa HOM05D003534 ORTHO05D004911 3.6e-42 176.0 242 41.7
AagrBONN_evm.TU.Sc2ySwM_228.187 Anthoceros agrestis HOM05D003534 ORTHO05D004911 6.2e-42 175.3 269 36.1
Nitab4.5_0006725g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.8e-41 173.7 264 39.4
Ciclev10027844m.g Citrus clementina HOM05D003534 ORTHO05D004911 2.4e-41 173.3 250 38.4
Mapoly0151s0007 Marchantia polymorpha HOM05D003534 ORTHO05D004911 9.0e-41 171.4 272 39.7
Medtr4g070380 Medicago truncatula HOM05D003534 ORTHO05D004911 3.8e-39 166.0 246 37.4
SMO361G0155 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 3.8e-39 166.0 261 39.1
SMO361G0409 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 3.8e-39 166.0 261 39.1
SMO361G0029 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.9e-38 163.7 263 38.0
BcaB05g23691 Brassica carinata HOM05D003534 ORTHO05D004911 3.5e-37 159.5 255 36.1
Oeu029149.3 Olea europaea HOM05D003534 ORTHO05D004911 1.8e-33 147.1 283 34.6
CBR_g6403 Chara braunii HOM05D003534 ORTHO05D004911 6.9e-33 145.2 263 33.1
Hma1.2p1_0617F.1_g190140 Hydrangea macrophylla HOM05D003534 ORTHO05D004911 1.7e-31 140.6 275 35.3
Peaxi162Scf00314g00224 Petunia axillaris HOM05D003534 ORTHO05D004911 2.2e-31 140.2 248 35.9
PSO675G8187 Papaver somniferum HOM05D003534 ORTHO05D004911 2.9e-31 139.8 152 50.0
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 9.3e-30 134.8 163 44.2
Cfa023799 Carpinus fangiana HOM05D003534 ORTHO05D004911 3.5e-29 132.9 260 33.1
CAN.G616.16 Capsicum annuum HOM05D003534 ORTHO05D004911 1.8e-28 130.6 226 36.7
Cre12.g529500 Chlamydomonas reinhardtii HOM05D003534 ORTHO05D004911 3.9e-28 129.4 282 29.4
Carub.0006s3329 Capsella rubella HOM05D003534 ORTHO05D004911 7.4e-27 125.2 250 31.6
PRCOL_00001513 Prasinoderma coloniale HOM05D003534 ORTHO05D004911 1.3e-26 124.4 266 31.2
SMO361G0680 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.6e-26 124.0 260 35.0
ClCG11G000160 Citrullus lanatus HOM05D001035 ORTHO05D001045 1.8e-20 104.0 225 29.8
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 5.7e-19 99.0 144 40.3
Haze_26769 Corylus avellana HOM05D003534 ORTHO05D004911 5.3e-17 92.4 261 30.3
MCO16G310 Micromonas commoda HOM05D003534 ORTHO05D004911 5.3e-17 92.4 154 35.7
SEGI_37147 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 2.0e-16 90.5 107 44.9
Atru.chr5.3044 Acer truncatum HOM05D003534 ORTHO05D004911 3.8e-15 86.3 126 37.3
CANSAT21G0339 Cannabis sativa HOM05D003534 ORTHO05D004911 5.5e-14 82.4 110 41.8
Oeu029134.1 Olea europaea HOM05D003534 ORTHO05D004911 6.7e-12 75.5 65 50.8
BcaC06g32787 Brassica carinata HOM05D003534 ORTHO05D004911 8.8e-12 75.1 78 42.3
AagrBONN_evm.TU.Sc2ySwM_228.235 Anthoceros agrestis HOM05D003534 ORTHO05D004911 5.7e-11 72.4 107 38.3
SMO361G0744 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 8.5e-07 58.5 60 46.7


User provided reference genes

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