Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.7e-235 818.9 408 100.0
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 7.4e-231 803.5 408 97.8
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 5.9e-212 740.7 370 95.9
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.9e-186 656.0 408 79.7
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.5e-183 646.4 388 81.7
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 5.8e-183 644.4 389 81.0
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 8.3e-182 640.6 378 82.0
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.1e-181 640.2 393 80.4
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.4e-181 639.0 348 87.1
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 3.2e-181 638.6 407 78.4
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 3.2e-181 638.6 396 78.0
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 3.2e-181 638.6 346 87.3
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 9.2e-181 637.1 387 80.1
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.1e-180 636.0 347 87.0
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 3.5e-180 635.2 401 78.1
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 6.0e-180 634.4 374 80.7
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.0e-179 633.6 383 80.7
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.3e-179 633.3 406 77.3
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 1.3e-179 633.3 341 88.0
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.7e-179 632.9 406 77.1
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 1.7e-179 632.9 407 77.1
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 3.0e-179 632.1 408 76.5
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 3.9e-179 631.7 407 77.4
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 8.6e-179 630.6 348 85.3
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 8.6e-179 630.6 349 85.7
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.1e-178 630.2 347 85.3
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 1.1e-178 630.2 404 77.5
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.5e-178 629.8 412 77.2
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.9e-178 629.4 386 80.8
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.9e-178 629.4 384 80.7
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 4.3e-178 628.2 395 77.7
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 4.3e-178 628.2 352 85.5
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 7.3e-178 627.5 347 85.3
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 2.1e-177 625.9 395 77.5
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.8e-177 625.5 386 79.0
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.8e-177 625.5 349 86.0
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 3.6e-177 625.2 397 77.3
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 4.7e-177 624.8 347 84.1
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 4.7e-177 624.8 390 79.2
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 6.2e-177 624.4 377 79.6
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.4e-176 623.2 347 83.9
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.4e-176 623.2 383 78.9
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.8e-176 622.9 391 78.0
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.8e-176 622.9 347 84.4
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.8e-176 622.9 396 77.0
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.8e-176 622.9 400 77.0
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 3.1e-176 622.1 347 84.7
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 4.0e-176 621.7 387 77.3
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 4.0e-176 621.7 387 77.3
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 4.0e-176 621.7 365 81.9
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 4.0e-176 621.7 391 78.3
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 6.8e-176 620.9 382 78.5
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.9e-176 620.5 405 75.8
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 8.9e-176 620.5 395 77.5
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 8.9e-176 620.5 340 84.7
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.2e-175 620.2 399 76.7
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-175 620.2 365 81.6
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.5e-175 619.8 371 80.1
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.5e-175 619.8 405 75.8
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.5e-175 619.8 356 81.7
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.5e-175 619.8 382 79.1
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.0e-175 619.4 395 75.7
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 2.0e-175 619.4 392 78.3
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.0e-175 619.4 395 77.5
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.0e-175 619.4 400 76.8
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 3.4e-175 618.6 357 82.4
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 3.4e-175 618.6 360 80.6
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 3.4e-175 618.6 410 75.6
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 4.4e-175 618.2 343 86.3
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 7.5e-175 617.5 408 74.8
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 7.5e-175 617.5 357 82.1
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 7.5e-175 617.5 357 82.1
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 9.9e-175 617.1 382 78.3
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 9.9e-175 617.1 352 83.5
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.7e-174 616.3 414 75.1
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 4.9e-174 614.8 394 79.2
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 6.4e-174 614.4 406 75.4
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.1e-173 613.6 344 85.5
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.1e-173 613.6 396 76.5
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 2.4e-173 612.5 394 75.9
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 4.1e-173 611.7 373 79.1
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 9.2e-173 610.5 398 76.9
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 1.6e-172 609.8 371 79.5
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 4.6e-172 608.2 403 74.4
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.3e-171 606.7 403 74.7
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.7e-171 606.3 405 75.8
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.9e-170 602.8 391 75.7
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 3.3e-170 602.1 341 83.3
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 9.5e-170 600.5 324 88.0
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.2e-169 600.1 391 75.4
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.2e-169 600.1 369 79.7
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.2e-169 600.1 392 75.5
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.2e-169 600.1 374 78.1
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.2e-169 600.1 361 80.3
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.6e-169 599.7 394 74.9
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.4e-168 596.7 373 78.6
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.8e-168 596.3 353 81.3
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 7.6e-167 590.9 385 74.3
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.3e-166 590.1 308 89.3
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.7e-166 589.7 464 66.2
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.4e-165 584.7 362 78.2
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.5e-164 582.0 366 77.6
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 4.6e-164 581.6 362 78.2
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.0e-163 580.5 391 72.9
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 8.7e-163 577.4 310 86.1
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 2.5e-162 575.9 365 76.4
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.5e-162 575.9 302 88.7
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 5.3e-160 568.2 408 71.1
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 9.0e-160 567.4 394 75.1
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.2e-156 557.0 359 76.3
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 8.7e-155 550.8 383 72.1
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.1e-154 550.4 350 74.0
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 2.5e-154 549.3 412 68.4
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 2.5e-154 549.3 499 58.3
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 3.3e-154 548.9 561 53.3
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 7.3e-154 547.7 347 74.1
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.1e-153 546.2 371 70.4
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 2.0e-151 539.7 414 68.8
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 2.6e-151 539.3 550 53.5
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.8e-151 538.1 357 71.7
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 2.2e-150 536.2 303 80.9
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 3.4e-135 485.7 243 89.3
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 3.5e-132 475.7 380 62.1
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.8e-128 463.4 395 62.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.4e-128 463.0 299 74.9
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.7e-124 449.5 308 67.5
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 7.9e-124 448.0 357 61.1
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 7.0e-112 408.3 283 72.4
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 2.6e-111 406.4 254 79.5
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.3e-102 377.5 342 55.8
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.3e-102 377.5 212 82.5
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.7e-102 377.1 221 80.1
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 3.8e-102 375.9 350 54.6
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.5e-93 346.7 228 74.1
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 6.3e-89 332.0 288 54.2
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-85 320.5 209 73.2
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.0e-79 300.4 229 68.6
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.2e-68 264.6 127 96.1
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 1.1e-67 261.5 311 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.1e-67 260.0 331 43.5
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 2.6e-66 256.9 344 41.3
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 2.2e-65 253.8 358 38.8
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.2e-65 253.8 324 42.0
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 8.1e-60 235.3 310 40.0
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.7e-57 227.6 327 40.4
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.4e-56 224.6 179 64.8
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 6.8e-51 205.7 247 41.7
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.6e-47 193.0 115 81.7
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 4.3e-45 186.4 155 61.9
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 6.7e-30 136.0 92 72.8
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 1.4e-24 118.2 74 71.6
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 3.5e-23 113.6 156 43.6
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 8.2e-20 102.4 62 79.0
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.2e-17 94.4 83 63.9
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 2.1e-15 87.8 49 79.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 5.1e-14 83.2 169 39.1
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 6.7e-14 82.8 73 58.9
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 2.4e-11 74.3 33 87.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 8.5e-09 65.9 34 73.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 1.4e-06 58.5 31 80.6


User provided reference genes

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