Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 0.0e+00 1663.7 986 100.0
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 0.0e+00 1496.9 990 92.3
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.8e-283 979.5 993 64.0
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 7.2e-280 967.6 1000 62.9
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 5.1e-278 961.4 1000 62.2
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 1.1e-277 960.3 1002 61.9
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 9.7e-277 957.2 988 62.3
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 8.5e-273 944.1 998 61.3
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.5e-269 933.3 1044 59.0
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 1.8e-267 926.4 1002 61.3
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 2.4e-267 926.0 1002 61.2
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 1.0e-265 920.6 1012 60.5
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 6.1e-263 911.4 995 60.1
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 8.0e-263 911.0 1058 58.5
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 4.0e-262 908.7 997 59.4
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 9.8e-261 904.0 1001 60.7
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 1.3e-260 903.7 1019 58.7
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 8.3e-260 901.0 1025 59.2
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 5.4e-259 898.3 1015 58.6
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 5.0e-257 891.7 1008 59.1
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 1.1e-256 890.6 1014 57.9
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 2.7e-255 885.9 1007 60.1
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 6.1e-255 884.8 1002 58.8
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 4.0e-254 882.1 1030 57.2
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 8.8e-254 880.9 1051 56.3
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 4.4e-253 878.6 1065 55.4
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.3e-252 877.1 1012 58.1
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 1.7e-252 876.7 1015 57.4
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 6.3e-252 874.8 1024 57.2
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 8.3e-252 874.4 1011 58.5
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 4.1e-251 872.1 1045 55.5
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 7.0e-251 871.3 1010 59.2
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.6e-250 870.2 1009 59.0
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 5.9e-250 868.2 1018 57.1
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 8.6e-249 864.4 1046 54.9
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.9e-248 863.2 1050 55.1
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 2.5e-248 862.8 1038 55.2
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 4.3e-248 862.1 751 68.8
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 5.6e-248 861.7 996 56.3
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 5.6e-248 861.7 1008 58.6
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 7.3e-248 861.3 1056 54.6
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 2.1e-247 859.8 1031 57.1
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 2.1e-247 859.8 1027 55.7
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 4.7e-247 858.6 1007 58.3
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 1.0e-246 857.4 1007 56.8
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.4e-246 857.1 1006 58.4
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 2.3e-246 856.3 1041 56.1
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 6.8e-246 854.7 1007 56.8
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 1.2e-245 854.0 993 57.1
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 7.5e-245 851.3 1008 58.1
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 9.8e-245 850.9 985 56.5
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.7e-244 850.1 1006 57.8
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.7e-244 850.1 1002 58.5
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 3.7e-244 849.0 999 56.0
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 6.4e-244 848.2 988 57.2
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 8.3e-244 847.8 988 56.2
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 8.3e-244 847.8 1015 57.3
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 4.1e-243 845.5 1043 55.0
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 1.6e-242 843.6 1019 56.8
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 1.6e-242 843.6 1044 54.7
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 3.5e-242 842.4 1061 55.9
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 7.8e-242 841.3 1019 56.2
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 1.3e-241 840.5 1001 58.7
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 2.3e-241 839.7 995 55.7
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 6.6e-241 838.2 993 55.8
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 1.5e-240 837.0 1009 57.2
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 1.9e-240 836.6 1006 56.1
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 2.8e-239 832.8 999 55.4
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 3.6e-239 832.4 1029 54.8
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 6.2e-239 831.6 998 57.4
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 5.2e-238 828.6 1045 55.5
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 6.8e-238 828.2 1002 55.4
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 6.8e-238 828.2 1015 55.9
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 6.8e-238 828.2 1004 55.9
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 1.2e-237 827.4 996 57.0
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 2.6e-237 826.2 1008 57.0
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 9.8e-237 824.3 1019 56.0
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 1.7e-236 823.5 1005 57.6
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 1.7e-236 823.5 1029 55.1
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 4.1e-235 818.9 1004 56.8
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 5.4e-235 818.5 1172 51.1
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 5.4e-235 818.5 1019 55.0
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.0e-234 816.6 1088 52.2
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 6.6e-233 811.6 1047 53.7
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 8.6e-233 811.2 1045 54.4
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 1.1e-232 810.8 1054 53.7
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 9.5e-232 807.7 1040 54.2
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 2.8e-231 806.2 990 55.2
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 4.7e-231 805.4 1037 54.2
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 1.8e-230 803.5 985 56.8
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 2.0e-229 800.0 1027 53.3
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 4.4e-229 798.9 1012 55.0
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 5.8e-229 798.5 1074 52.9
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 9.8e-229 797.7 1006 54.5
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 1.3e-228 797.3 1008 55.4
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 2.9e-228 796.2 1006 56.4
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 3.7e-228 795.8 1001 55.4
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 1.1e-227 794.3 1040 53.0
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 3.2e-227 792.7 1047 53.4
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 1.2e-226 790.8 981 55.2
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 4.6e-226 788.9 1144 49.4
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 5.1e-225 785.4 1029 53.2
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 9.5e-224 781.2 999 55.4
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 9.9e-221 771.2 1034 52.7
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 5.4e-219 765.4 1155 48.4
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 2.1e-218 763.5 987 52.9
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 2.1e-215 753.4 1051 51.9
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 1.8e-214 750.4 989 52.5
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 1.1e-211 741.1 1043 51.7
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 1.9e-211 740.3 1008 52.1
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 9.3e-211 738.0 990 52.8
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 1.6e-210 737.3 1055 49.6
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 7.8e-210 734.9 1056 51.1
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 7.3e-208 728.4 1003 53.7
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 1.3e-207 727.6 990 52.2
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 4.8e-199 699.1 981 51.4
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 4.5e-181 639.4 992 47.1
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 1.1e-179 634.8 1024 47.9
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 9.3e-179 631.7 1085 44.3
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 2.5e-176 623.6 1015 45.5
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 2.2e-167 594.0 1001 45.0
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 3.4e-165 586.6 481 73.2
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 4.5e-165 586.3 911 47.7
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 8.2e-159 565.5 549 66.1
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 2.4e-158 563.9 790 51.6
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.0e-153 548.5 617 58.2
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 2.3e-137 494.2 762 46.9
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 2.1e-109 401.4 393 62.1
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 2.4e-102 377.9 1036 33.2
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 4.3e-67 260.8 467 42.0
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 1.1e-65 256.1 537 40.8
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 2.8e-50 204.9 347 45.5
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 6.3e-50 203.8 155 74.2
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 4.1e-49 201.1 206 58.7
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 2.2e-47 195.3 320 43.1
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.5e-46 191.8 296 49.3
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 6.3e-42 177.2 135 75.6
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 1.7e-39 169.1 729 28.8
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 7.2e-38 163.7 360 39.4
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 2.0e-32 145.6 120 73.3
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.9e-32 144.1 244 47.1
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 5.5e-30 137.5 90 84.4
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 5.5e-30 137.5 504 30.8
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 1.6e-29 136.0 393 33.8
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 8.0e-29 133.7 183 49.2
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 1.0e-28 133.3 667 27.0
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 2.6e-27 128.6 88 75.0
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 1.3e-26 126.3 454 29.5
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 2.2e-26 125.6 406 32.5
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 4.8e-26 124.4 87 78.2
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.4e-25 120.9 81 80.2
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 5.4e-25 120.9 461 32.5
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 4.5e-24 117.9 584 28.6
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.0e-23 116.7 640 25.9
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 2.9e-23 115.2 358 32.4
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 8.6e-23 113.6 189 41.3
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 7.2e-22 110.5 100 63.0
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 7.2e-22 110.5 98 67.3
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 6.1e-21 107.5 166 47.6
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 8.0e-21 107.1 81 71.6
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 1.8e-20 105.9 99 63.6
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 5.7e-19 100.9 63 84.1
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 4.9e-18 97.8 84 66.7
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.1e-17 96.7 89 65.2
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 2.7e-16 92.0 60 86.7
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 1.3e-15 89.7 63 79.4
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 1.3e-15 89.7 63 79.4
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 3.8e-15 88.2 120 50.0
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 3.3e-14 85.1 73 67.1
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 1.0e-12 80.1 74 60.8
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 4.0e-12 78.2 95 54.7
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 2.2e-10 72.4 71 60.6
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 6.4e-10 70.9 245 32.7
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 2.4e-09 68.9 88 51.1
MBI19_g34543_MAGBIO Magnolia biondii HOM05D003521 ORTHO05D000476 6.0e-08 64.3 45 71.1
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 1.0e-07 63.5 45 75.6
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 3.0e-07 62.0 78 48.7
Ca_25011_v3 Cicer arietinum L. HOM05D010632 ORTHO05D000013 8.6e-07 60.5 69 59.4


User provided reference genes

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