Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 1.2e-214 750.7 865 100.0
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 1.2e-166 591.3 797 96.4
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 1.5e-108 398.3 826 82.2
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 3.6e-102 377.1 806 84.1
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 4.8e-102 376.7 860 79.0
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 1.4e-101 375.2 845 79.9
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 5.6e-95 353.2 788 77.4
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 7.4e-95 352.8 834 81.2
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 4.9e-91 340.1 796 74.2
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 1.4e-90 338.6 793 83.2
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 2.4e-90 337.8 790 83.9
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 7.1e-90 336.3 822 80.9
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 2.1e-89 334.7 797 82.7
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 2.7e-89 334.3 791 74.2
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 7.9e-89 332.8 803 80.1
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 3.7e-86 323.9 796 81.5
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 4.8e-86 323.6 793 75.8
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 4.8e-86 323.6 783 80.2
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 4.0e-85 320.5 798 82.0
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 2.0e-84 318.2 828 68.4
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 7.6e-84 316.2 793 79.6
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 1.7e-83 315.1 824 73.9
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 3.8e-83 313.9 775 82.5
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 8.4e-83 312.8 782 72.0
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 3.2e-82 310.8 800 80.5
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 4.2e-82 310.5 788 75.4
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 2.1e-81 308.1 839 72.5
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.3e-80 305.4 838 77.8
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 2.3e-80 304.7 835 78.1
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 3.9e-80 303.9 780 82.2
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 6.7e-80 303.1 802 80.3
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 8.7e-80 302.8 842 68.6
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 1.1e-79 302.4 787 82.0
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 1.5e-79 302.0 802 80.0
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 3.3e-79 300.8 784 81.6
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 3.3e-79 300.8 780 80.9
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 9.6e-79 299.3 789 81.4
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 9.6e-79 299.3 803 80.4
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 3.7e-78 297.4 790 66.5
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 6.3e-78 296.6 782 65.3
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 4.1e-77 293.9 806 70.6
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 6.9e-77 293.1 779 68.5
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 9.0e-77 292.7 747 60.6
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 4.5e-76 290.4 789 80.9
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 2.9e-75 287.7 845 62.1
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 2.9e-75 287.7 911 50.6
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 1.9e-74 285.0 756 82.4
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 1.2e-73 282.3 854 67.6
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.2e-73 282.3 832 60.8
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 8.7e-72 276.2 779 81.0
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.1e-71 275.8 806 68.2
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 1.9e-71 275.0 788 80.2
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 5.7e-71 273.5 793 70.5
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 3.7e-70 270.8 776 81.3
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 8.2e-70 269.6 798 71.7
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 1.8e-69 268.5 799 79.1
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 2.0e-68 265.0 391 73.9
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 3.4e-68 264.2 782 79.8
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 5.9e-68 263.5 779 72.4
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 2.2e-67 261.5 796 78.3
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 2.2e-67 261.5 804 71.3
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 3.6e-65 254.2 809 77.8
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 6.1e-65 253.4 802 75.8
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 5.7e-63 246.9 789 73.8
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 7.4e-63 246.5 163 71.2
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 2.8e-62 244.6 796 61.6
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 2.8e-62 244.6 782 78.6
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 4.8e-62 243.8 790 69.2
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 8.2e-62 243.0 351 75.5
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 1.1e-61 242.7 793 77.8
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.1e-61 242.7 322 78.6
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 1.1e-61 242.7 773 78.4
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.2e-60 239.2 742 81.0
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 1.5e-60 238.8 179 65.4
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 2.6e-60 238.0 781 62.7
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 5.9e-60 236.9 785 62.3
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 5.9e-60 236.9 785 62.3
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.9e-59 234.6 178 63.5
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 8.5e-59 233.0 787 67.9
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 1.4e-58 232.3 326 78.2
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 1.9e-58 231.9 338 75.1
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 3.2e-58 231.1 150 69.3
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 2.3e-56 224.9 322 79.5
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 8.8e-56 223.0 782 59.6
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 4.4e-55 220.7 814 67.8
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 4.8e-54 217.2 182 60.4
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 6.3e-54 216.9 162 65.4
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 7.0e-53 213.4 167 62.3
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 2.2e-51 208.4 156 66.0
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 8.5e-51 206.5 160 63.8
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 8.5e-51 206.5 169 60.9
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 4.7e-49 200.7 146 66.4
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.4e-48 199.1 170 55.9
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.0e-47 195.3 156 60.9
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.0e-47 195.3 156 60.9
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.4e-45 189.1 350 69.4
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 4.1e-45 187.6 721 80.6
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 7.7e-44 183.3 553 38.0
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 1.3e-43 182.6 168 52.4
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 8.5e-43 179.9 168 53.0
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 8.5e-43 179.9 114 78.1
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 2.1e-41 175.3 161 52.8
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.5e-39 169.1 145 57.2
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 8.3e-38 163.3 132 59.1
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 2.4e-37 161.8 110 67.3
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 3.5e-36 157.9 143 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 8.5e-35 153.3 121 58.7
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 1.2e-33 149.4 115 62.6
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 2.0e-31 142.1 116 61.2
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 5.9e-28 130.6 89 70.8
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 2.1e-25 122.1 67 77.6
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 4.7e-25 120.9 237 63.7
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.0e-24 118.2 115 50.4
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.5e-23 115.9 109 52.3
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 7.5e-23 113.6 104 48.1
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 6.4e-22 110.5 87 59.8
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 7.0e-21 107.1 90 54.4
MELO3C031816.2 Cucumis melo HOM05D006106 ORTHO05D007662 5.0e-19 100.9 86 52.3
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 4.7e-17 94.4 78 56.4
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 1.0e-16 93.2 78 55.1
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 1.7e-14 85.9 79 48.1
MELO3C030027.2 Cucumis melo HOM05D006106 ORTHO05D007662 3.7e-14 84.7 68 55.9
COL.COLO4_28306 Corchorus olitorius HOM05D006106 ORTHO05D007662 2.7e-12 78.6 124 41.1
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.4e-08 66.2 45 66.7
Lalb_Chr07g0184891 Lupinus albus HOM05D006414 ORTHO05D007780 5.2e-08 64.3 132 30.3
FvH4_4g12030 Fragaria vesca HOM05D006414 ORTHO05D007780 1.2e-07 63.2 132 28.8
CSS0011059 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 2.6e-07 62.0 105 34.3
CSS0026013 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 2.6e-07 62.0 105 34.3
MD03G1187700 Malus domestica HOM05D006414 ORTHO05D007780 5.8e-07 60.8 129 28.7
Phvul.002G263600 Phaseolus vulgaris HOM05D006414 ORTHO05D007780 5.8e-07 60.8 82 36.6
TWI74G0679 Tripterygium wilfordii HOM05D006414 ORTHO05D007780 9.8e-07 60.1 112 31.2
HanXRQChr07g0202341 Helianthus annuus HOM05D006414 ORTHO05D007780 1.3e-06 59.7 107 29.9
Gohir.A10G086500 Gossypium hirsutum HOM05D006414 ORTHO05D007780 1.7e-06 59.3 113 30.1
Thecc.01G110400 Theobroma cacao HOM05D006414 ORTHO05D007780 1.7e-06 59.3 83 37.3
ECA238G3570 Erigeron canadensis HOM05D006414 ORTHO05D007780 2.2e-06 58.9 99 31.3
Eucgr.L02634 Eucalyptus grandis HOM05D006414 ORTHO05D007780 2.2e-06 58.9 120 25.0
RcHm_v2.0_Chr4g0409671 Rosa chinensis HOM05D006414 ORTHO05D007780 2.2e-06 58.9 135 28.9
Glyma.05G182700 Glycine max HOM05D006414 ORTHO05D007780 2.9e-06 58.5 82 35.4
Gohir.D10G102200 Gossypium hirsutum HOM05D006414 ORTHO05D007780 2.9e-06 58.5 113 30.1
Gorai.011G111900 Gossypium raimondii HOM05D006414 ORTHO05D007780 2.9e-06 58.5 113 30.1
SalBow8G0663 Salvia bowleyana HOM05D000608 ORTHO05D007780 2.9e-06 58.5 118 30.5
SalBow8G2565 Salvia bowleyana HOM05D000608 ORTHO05D007780 2.9e-06 58.5 118 30.5
Atru.chr4.307 Acer truncatum HOM05D006414 ORTHO05D007780 3.7e-06 58.2 135 28.1
Lj2A560T64 Lonicera japonica HOM05D006414 ORTHO05D007780 3.7e-06 58.2 125 29.6
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 3.7e-06 58.2 78 38.5
Prupe.4G236100 Prunus persica HOM05D006414 ORTHO05D007780 3.7e-06 58.2 105 30.5
arahy.Tifrunner.gnm1.ann1.N3YXA0 Arachis hypogaea HOM05D006414 ORTHO05D007780 4.9e-06 57.8 82 34.1
arahy.Tifrunner.gnm1.ann1.S4ITMM Arachis hypogaea HOM05D006414 ORTHO05D007780 4.9e-06 57.8 82 34.1
Cc07_g15860 Coffea canephora HOM05D006414 ORTHO05D007780 4.9e-06 57.8 105 32.4
Glyma.08G140300 Glycine max HOM05D006414 ORTHO05D007780 4.9e-06 57.8 82 35.4
Medtr8g091670 Medicago truncatula HOM05D006414 ORTHO05D007780 4.9e-06 57.8 82 35.4
Psat7g051760 Pisum sativum HOM05D006414 ORTHO05D007780 4.9e-06 57.8 82 35.4
TPR.G2171 Trifolium pratense HOM05D006414 ORTHO05D007780 4.9e-06 57.8 82 35.4
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 4.9e-06 57.8 79 38.0
CDE10G0169 Ceratophyllum demersum HOM05D006414 ORTHO05D007780 6.4e-06 57.4 115 30.4
Actinidia16042 Actinidia chinensis HOM05D006414 ORTHO05D007780 8.3e-06 57.0 131 31.3
arahy.Tifrunner.gnm1.ann1.BPVH0U Arachis hypogaea HOM05D006414 ORTHO05D007780 8.3e-06 57.0 82 32.9
ClCG01G019140 Citrullus lanatus HOM05D006414 ORTHO05D007780 8.3e-06 57.0 82 34.1
MELO3C007791.2 Cucumis melo HOM05D006414 ORTHO05D007780 8.3e-06 57.0 82 34.1
CsaV3_6G045830 Cucumis sativus L. HOM05D006414 ORTHO05D007780 8.3e-06 57.0 82 34.1


User provided reference genes

Program Settings