Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 5.9e-48 194.1 116 100.0
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.2e-19 100.1 71 73.2
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 1.2e-19 100.1 71 73.2
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 2.8e-18 95.5 71 69.0
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 6.3e-18 94.4 71 67.6
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 1.4e-17 93.2 69 69.6
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 4.1e-17 91.7 71 66.2
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.2e-16 90.1 71 63.4
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.6e-16 89.7 69 63.8
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 2.0e-16 89.4 68 67.6
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.0e-16 89.4 71 64.8
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 2.0e-16 89.4 71 64.8
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.7e-16 89.0 69 65.2
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 3.5e-16 88.6 69 66.7
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 4.5e-16 88.2 71 63.4
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 7.7e-16 87.4 65 67.7
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 1.0e-15 87.0 73 64.4
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.3e-15 86.7 71 62.0
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.3e-15 86.7 71 63.4
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 1.3e-15 86.7 83 60.2
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.3e-15 86.7 83 60.2
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.7e-15 86.3 71 64.8
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 1.7e-15 86.3 73 64.4
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 1.7e-15 86.3 69 63.8
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.2e-15 85.9 71 62.0
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 2.9e-15 85.5 71 60.6
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 8.5e-15 84.0 70 67.1
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 8.5e-15 84.0 71 59.2
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 8.5e-15 84.0 71 59.2
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 8.5e-15 84.0 73 61.6
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-14 83.6 69 60.9
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-14 83.6 69 60.9
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.1e-14 83.6 69 62.3
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.9e-14 82.8 65 66.2
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.9e-14 82.8 65 64.6
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 3.2e-14 82.0 71 57.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 3.2e-14 82.0 71 63.4
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 4.2e-14 81.6 71 57.7
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 4.2e-14 81.6 71 57.7
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 4.2e-14 81.6 72 59.7
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 4.2e-14 81.6 72 59.7
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 4.2e-14 81.6 72 59.7
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 4.2e-14 81.6 72 59.7
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 4.2e-14 81.6 71 57.7
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 4.2e-14 81.6 69 59.4
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 5.5e-14 81.3 73 58.9
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 7.2e-14 80.9 71 57.7
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 7.2e-14 80.9 71 62.0
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 7.2e-14 80.9 71 54.9
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 9.4e-14 80.5 73 60.3
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 1.2e-13 80.1 72 58.3
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.2e-13 80.1 72 58.3
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 1.2e-13 80.1 72 58.3
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.2e-13 80.1 72 58.3
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 1.2e-13 80.1 72 58.3
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 1.2e-13 80.1 72 58.3
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 1.2e-13 80.1 72 58.3
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.6e-13 79.7 73 58.9
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 1.6e-13 79.7 65 66.2
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 2.1e-13 79.3 72 59.7
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.7e-13 79.0 71 60.6
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 2.7e-13 79.0 72 56.9
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 3.6e-13 78.6 72 56.9
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 4.7e-13 78.2 73 58.9
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 6.1e-13 77.8 72 56.9
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 6.1e-13 77.8 72 56.9
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 8.0e-13 77.4 95 58.9
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 8.0e-13 77.4 69 58.0
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 8.0e-13 77.4 72 56.9
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.8e-12 76.3 72 56.9
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 1.8e-12 76.3 72 58.3
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.8e-12 76.3 73 57.5
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 2.3e-12 75.9 69 58.0
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 3.0e-12 75.5 65 61.5
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 4.0e-12 75.1 71 56.3
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 4.0e-12 75.1 72 54.2
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 4.0e-12 75.1 71 56.3
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 4.0e-12 75.1 71 54.9
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.2e-12 74.7 73 56.2
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 5.2e-12 74.7 71 56.3
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.2e-11 73.6 69 55.1
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.2e-11 73.6 69 55.1
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 1.2e-11 73.6 69 55.1
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 2.0e-11 72.8 69 55.1
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.0e-11 72.8 74 54.1
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.0e-11 72.8 74 54.1
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.0e-11 72.8 67 56.7
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 3.4e-11 72.0 69 56.5
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 3.4e-11 72.0 70 58.6
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 3.4e-11 72.0 65 56.9
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.4e-11 72.0 69 55.1
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 4.4e-11 71.6 71 53.5
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 5.7e-11 71.2 64 51.6
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.5e-11 70.9 74 52.7
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 7.5e-11 70.9 70 57.1
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 7.5e-11 70.9 69 52.2
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 7.5e-11 70.9 69 53.6
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 9.8e-11 70.5 71 53.5
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.7e-10 69.7 74 52.7
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 2.2e-10 69.3 60 58.3
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.8e-10 68.9 69 53.6
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.8e-10 68.9 71 52.1
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 2.8e-10 68.9 52 63.5
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 3.7e-10 68.6 99 53.5
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 4.8e-10 68.2 71 53.5
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 4.8e-10 68.2 69 50.7
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 4.8e-10 68.2 69 50.7
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 8.3e-10 67.4 51 60.8
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.1e-09 67.0 72 48.6
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 1.4e-09 66.6 49 63.3
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 1.4e-09 66.6 70 52.9
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.8e-09 66.2 52 63.5
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 3.1e-09 65.5 74 51.4
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 3.1e-09 65.5 69 52.2
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 4.1e-09 65.1 48 62.5
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 5.4e-09 64.7 72 51.4
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 9.1e-09 63.9 71 46.5
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.2e-08 63.5 73 49.3
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.0e-08 62.8 53 60.4
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 2.7e-08 62.4 72 50.0
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 3.5e-08 62.0 71 45.1
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 5.9e-08 61.2 73 46.6
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 5.9e-08 61.2 73 46.6
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 7.7e-08 60.8 83 45.8
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 1.0e-07 60.5 45 60.0
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.3e-07 60.1 70 47.1
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.3e-07 60.1 45 60.0
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.7e-07 59.7 43 62.8
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 2.9e-07 58.9 44 59.1
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 3.8e-07 58.5 48 58.3
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 3.8e-07 58.5 48 58.3
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 5.0e-07 58.2 75 42.7
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 5.0e-07 58.2 75 42.7
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 5.0e-07 58.2 47 61.7
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 5.0e-07 58.2 53 54.7
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.1e-06 57.0 52 59.6
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-06 57.0 44 56.8
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-06 57.0 44 56.8
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-06 57.0 44 56.8
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-06 57.0 44 56.8
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-06 57.0 44 56.8
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.9e-06 56.2 52 57.7
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.9e-06 56.2 47 57.4
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.5e-06 55.8 44 54.5
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 2.5e-06 55.8 87 43.7
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 3.3e-06 55.5 42 59.5
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.2e-06 55.1 65 50.8
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 4.2e-06 55.1 71 43.7
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 9.5e-06 53.9 44 56.8
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 9.5e-06 53.9 42 54.8
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 9.5e-06 53.9 46 56.5
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 9.5e-06 53.9 72 48.6


User provided reference genes

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