Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 4.6e-305 1050.4 534 100.0
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-197 693.3 575 65.2
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 3.2e-133 479.6 587 48.2
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 5.5e-133 478.8 587 48.2
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 7.2e-133 478.4 586 48.5
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 1.6e-132 477.2 586 48.0
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 3.9e-131 472.6 586 47.6
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 6.7e-131 471.9 587 47.7
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 4.3e-130 469.2 586 46.6
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 2.8e-129 466.5 588 47.1
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 3.7e-129 466.1 589 47.2
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 4.8e-129 465.7 586 46.8
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 4.8e-129 465.7 586 47.1
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 4.8e-129 465.7 587 46.7
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 6.3e-129 465.3 586 47.1
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 1.1e-128 464.5 587 46.7
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 1.4e-128 464.2 586 46.8
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 1.8e-128 463.8 586 46.9
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 3.1e-128 463.0 586 46.9
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 4.1e-128 462.6 587 46.7
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 6.9e-128 461.8 587 46.5
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 9.1e-128 461.5 587 46.3
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 1.2e-127 461.1 559 46.7
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 1.2e-127 461.1 587 46.0
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 1.5e-127 460.7 586 46.1
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 2.0e-127 460.3 586 46.9
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 3.4e-127 459.5 586 46.8
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 1.3e-126 457.6 588 47.4
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 2.2e-126 456.8 586 46.2
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 2.2e-126 456.8 584 46.2
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 5.0e-126 455.7 555 46.8
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 5.0e-126 455.7 586 45.9
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 6.5e-126 455.3 586 46.4
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 8.5e-126 454.9 586 45.9
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 8.5e-126 454.9 586 46.2
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 1.4e-125 454.1 586 45.6
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.9e-125 453.8 586 45.7
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 2.5e-125 453.4 586 45.7
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 3.2e-125 453.0 586 46.1
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 3.2e-125 453.0 624 45.0
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 3.2e-125 453.0 586 46.9
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 4.2e-125 452.6 586 46.2
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 4.2e-125 452.6 586 46.1
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 5.5e-125 452.2 586 45.6
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 5.5e-125 452.2 587 45.7
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 9.4e-125 451.4 583 46.0
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 1.2e-124 451.1 586 45.4
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 1.2e-124 451.1 590 45.8
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 1.6e-124 450.7 596 45.0
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 2.7e-124 449.9 587 46.0
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 4.7e-124 449.1 587 45.5
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 6.1e-124 448.7 586 44.9
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 6.1e-124 448.7 586 45.6
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 7.9e-124 448.4 586 45.9
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 1.0e-123 448.0 597 44.7
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 1.0e-123 448.0 590 45.1
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 1.8e-123 447.2 603 45.3
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 2.3e-123 446.8 621 44.8
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 3.9e-123 446.0 586 45.2
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 5.1e-123 445.7 586 45.1
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 6.7e-123 445.3 589 45.3
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 6.7e-123 445.3 586 44.7
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 6.7e-123 445.3 583 43.9
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 8.8e-123 444.9 587 44.8
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 8.8e-123 444.9 586 44.5
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 8.8e-123 444.9 586 44.5
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 1.1e-122 444.5 586 45.2
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 1.5e-122 444.1 588 44.4
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 1.5e-122 444.1 588 44.4
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 1.5e-122 444.1 588 44.4
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 1.5e-122 444.1 586 45.1
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 2.0e-122 443.7 595 44.5
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 2.0e-122 443.7 586 45.4
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 2.6e-122 443.4 586 45.1
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 2.6e-122 443.4 586 45.1
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 2.6e-122 443.4 586 44.9
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 2.6e-122 443.4 583 45.1
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 3.3e-122 443.0 594 45.8
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 4.4e-122 442.6 583 46.3
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 7.4e-122 441.8 596 44.5
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.4e-122 441.8 594 45.6
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 9.7e-122 441.4 586 44.7
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.7e-122 441.4 594 45.6
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 1.7e-121 440.7 586 44.9
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 1.7e-121 440.7 587 45.0
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 2.2e-121 440.3 586 44.5
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 8.2e-121 438.3 586 45.2
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 1.1e-120 438.0 586 45.6
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 1.1e-120 438.0 586 45.1
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.4e-120 437.6 588 44.6
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 1.4e-120 437.6 594 45.1
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 1.8e-120 437.2 603 44.8
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 3.1e-120 436.4 558 46.2
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 3.1e-120 436.4 601 44.3
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 5.3e-120 435.6 603 43.3
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 9.1e-120 434.9 586 43.0
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 2.0e-119 433.7 587 44.1
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 2.9e-118 429.9 589 44.1
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 2.9e-118 429.9 558 45.5
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 6.5e-118 428.7 578 43.9
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 8.5e-118 428.3 587 43.1
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 1.9e-117 427.2 587 42.9
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 7.2e-117 425.2 569 44.1
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 9.4e-117 424.9 587 43.8
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 1.6e-116 424.1 588 44.2
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 2.1e-116 423.7 592 43.8
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 2.1e-116 423.7 601 45.1
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 2.1e-116 423.7 582 43.6
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.7e-116 423.3 635 43.0
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 6.1e-116 422.2 624 42.5
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.0e-116 421.8 635 42.8
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.0e-114 417.2 555 44.5
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.0e-114 417.2 590 42.7
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 7.4e-114 415.2 568 43.7
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 1.9e-109 400.6 591 42.8
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.2e-106 391.3 583 42.4
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 6.3e-105 385.6 375 58.1
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 8.5e-102 375.2 592 39.9
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.4e-99 367.9 449 46.1
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 2.2e-97 360.5 581 39.9
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 3.7e-97 359.8 562 39.0
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 8.3e-97 358.6 558 40.1
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-94 351.3 579 40.1
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 6.6e-94 349.0 529 41.6
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 1.5e-93 347.8 585 39.8
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 2.5e-93 347.1 550 40.2
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 2.1e-92 344.0 589 38.4
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 2.0e-90 337.4 560 39.6
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-86 324.7 559 37.9
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.5e-85 321.2 441 42.2
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-83 314.7 444 42.8
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 4.0e-83 313.2 418 44.3
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 5.2e-83 312.8 477 39.6
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 6.2e-76 289.3 583 35.7
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-72 278.5 478 38.1
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 3.5e-71 273.5 420 39.3
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 5.6e-69 266.2 354 44.1
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-64 251.1 591 32.0
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.4e-64 249.6 321 45.2
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-58 230.3 288 45.1
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-58 230.3 288 45.1
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 6.6e-54 216.1 315 40.3
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 3.6e-52 210.3 220 53.6
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 4.8e-52 209.9 591 29.8
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-51 208.8 354 37.3
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 8.4e-41 172.6 590 26.9
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.7e-36 157.1 181 48.6
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 1.8e-30 138.3 178 41.6
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.6e-29 132.5 149 49.7
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 8.2e-28 129.4 125 53.6
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.4e-24 118.6 117 50.4
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.8e-20 104.4 131 43.5
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.2e-18 99.0 251 29.1
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.3e-17 95.5 79 55.7
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.5e-16 91.3 141 41.8
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 3.1e-11 74.3 68 54.4
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.0e-10 71.6 71 47.9
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.1e-08 65.9 146 37.0
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.8e-06 58.5 66 47.0
ECA232G1163 Erigeron canadensis HOM05D001760 ORTHO05D001691 6.7e-06 56.6 134 30.6
FvH4_1g17050 Fragaria vesca HOM05D001760 ORTHO05D001691 8.8e-06 56.2 255 25.1


User provided reference genes

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