Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 2.6e-186 655.2 323 100.0
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 3.3e-181 638.3 323 97.2
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 5.5e-128 461.5 314 70.7
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 2.7e-127 459.1 287 74.9
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.1e-123 447.2 308 66.6
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 4.1e-123 445.3 308 66.2
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 6.9e-123 444.5 287 70.0
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 9.1e-123 444.1 310 68.1
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.1e-120 437.2 287 68.6
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 4.6e-119 431.8 315 64.8
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 7.9e-119 431.0 298 67.4
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 1.0e-118 430.6 287 69.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.8e-118 429.9 320 65.0
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 2.3e-118 429.5 314 62.7
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 3.0e-118 429.1 307 65.5
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.5e-117 426.8 304 64.5
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.5e-117 426.8 287 67.6
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.3e-117 425.6 288 67.4
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 7.4e-117 424.5 304 62.5
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 9.7e-117 424.1 287 68.3
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 2.2e-116 422.9 294 66.7
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.2e-116 422.9 306 63.4
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.7e-116 422.2 287 67.9
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.7e-116 422.2 288 66.7
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 3.7e-116 422.2 288 67.0
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 1.4e-115 420.2 285 68.4
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 2.4e-115 419.5 287 66.2
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 3.1e-115 419.1 288 68.1
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 1.5e-114 416.8 284 67.3
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 7.7e-114 414.5 321 63.9
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.0e-113 414.1 287 67.6
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.3e-113 413.7 307 66.1
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.7e-113 413.3 323 64.1
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.2e-113 412.9 285 66.7
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 2.9e-113 412.5 320 63.8
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.1e-112 410.6 291 64.6
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.4e-112 410.2 298 63.8
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 5.5e-112 408.3 284 65.8
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 5.5e-112 408.3 311 63.0
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 7.2e-112 407.9 284 66.5
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 3.6e-111 405.6 331 58.0
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 2.3e-110 402.9 285 64.9
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 1.5e-109 400.2 297 64.0
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.5e-109 400.2 295 61.7
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 2.2e-108 396.4 323 58.8
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.1e-107 394.0 302 61.9
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.1e-107 394.0 284 65.8
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 3.1e-107 392.5 295 63.1
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 7.0e-107 391.3 305 62.3
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.6e-106 390.2 258 69.4
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 2.0e-106 389.8 307 59.9
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 2.6e-106 389.4 304 62.2
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 7.7e-106 387.9 301 60.8
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.3e-105 387.1 253 70.0
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 6.5e-105 384.8 298 60.4
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 2.5e-104 382.9 256 67.6
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 3.2e-104 382.5 251 68.1
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 4.2e-104 382.1 299 60.2
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 5.5e-104 381.7 253 70.0
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 5.5e-104 381.7 317 59.3
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 2.1e-103 379.8 247 70.0
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 6.1e-103 378.3 285 61.4
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.0e-102 377.5 300 59.7
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 1.4e-102 377.1 260 67.3
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 3.0e-102 375.9 285 61.8
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 5.2e-102 375.2 282 61.7
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 1.5e-101 373.6 285 61.1
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 1.5e-101 373.6 317 56.8
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.5e-101 373.6 300 58.3
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 2.6e-101 372.9 300 58.0
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 3.3e-101 372.5 287 61.3
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 5.7e-101 371.7 306 58.5
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.3e-100 370.5 305 58.7
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.7e-100 370.2 307 57.3
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 4.8e-100 368.6 307 57.3
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 6.3e-100 368.2 300 58.3
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.1e-99 367.5 310 56.5
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 5.3e-99 365.2 285 58.6
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 5.3e-99 365.2 285 58.6
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 7.0e-99 364.8 285 58.6
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 3.2e-96 355.9 220 71.4
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.5e-93 344.7 287 56.4
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 3.7e-92 342.4 251 63.7
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 3.7e-92 342.4 251 63.3
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 1.2e-87 327.4 283 55.8
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.2e-87 327.4 280 56.1
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 2.1e-87 326.6 285 54.0
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.3e-86 323.2 287 55.7
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.0e-86 322.4 287 55.7
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.4e-83 313.2 303 52.1
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 2.0e-82 310.1 211 66.4
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 4.5e-82 308.9 223 65.0
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.0e-81 307.8 301 52.8
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.7e-81 307.0 191 73.3
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.5e-80 303.1 190 72.1
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 7.3e-80 301.6 279 50.2
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 9.5e-80 301.2 287 51.2
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 9.8e-77 291.2 283 53.7
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 4.9e-76 288.9 577 34.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 3.2e-75 286.2 278 47.5
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.0e-75 285.0 189 66.7
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 5.0e-73 278.9 164 76.8
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.1e-72 277.7 281 48.8
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 3.6e-71 272.7 299 44.1
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.4e-70 270.8 298 49.7
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.8e-62 243.8 153 69.9
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 5.8e-61 238.8 155 67.1
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.3e-56 221.9 177 59.9
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 7.3e-56 221.9 243 49.8
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.2e-54 215.7 243 48.1
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 5.2e-54 215.7 273 46.2
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 7.6e-53 211.8 148 62.8
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.4e-51 207.6 164 62.2
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.2e-45 188.0 166 55.4
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 3.9e-41 172.9 123 61.0
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.5e-40 171.0 119 62.2
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 4.3e-40 169.5 216 36.1
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 3.6e-39 166.4 148 54.7
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.1e-38 163.3 232 42.2
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.4e-37 159.8 195 44.1
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 6.4e-36 155.6 287 33.4
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 3.2e-35 153.3 108 67.6
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 3.5e-34 149.8 132 56.1
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 5.3e-30 136.0 101 65.3
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.2e-28 130.6 102 59.8
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.4e-27 127.1 76 69.7
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 3.2e-27 126.7 129 49.6
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.6e-21 107.1 76 63.2
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 4.3e-16 89.7 156 37.2
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.7e-16 89.4 67 61.2
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.2e-15 87.4 88 51.1
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.8e-14 84.3 80 60.0
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.9e-11 74.3 85 45.9
Pp3c6_8700 Physcomitrium patens HOM05D031523 ORTHO05D026640 6.1e-10 69.3 198 24.2


User provided reference genes

Program Settings