Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 2351.6 1193 100.0
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 2313.1 1194 98.2
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1706.4 1203 70.9
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1702.2 1176 71.9
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1657.1 1206 69.3
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1648.6 1202 68.5
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1647.1 1194 68.9
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1631.7 1202 67.8
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1630.5 1198 67.4
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1622.8 1203 67.6
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1619.8 1196 67.5
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1591.2 1189 67.1
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1574.3 1169 66.9
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1571.6 1194 65.6
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1567.7 1195 65.6
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1567.4 1197 65.8
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1567.4 1180 66.5
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1566.6 1205 64.9
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1565.1 1180 65.7
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1564.7 1194 64.8
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1564.3 1194 64.8
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1563.1 1200 64.8
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1560.0 1194 64.7
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1559.7 1179 65.4
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1558.9 1203 64.6
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1557.7 1197 65.0
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1555.4 1197 65.0
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1554.7 1202 64.1
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1552.0 1197 64.8
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1548.9 1202 64.5
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1548.5 1240 63.6
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1541.2 1192 64.5
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1533.1 1196 64.3
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1532.7 1192 64.0
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1528.8 1198 63.6
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1528.1 1201 62.9
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1524.2 1179 65.2
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1523.5 1196 63.6
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1519.6 1196 63.7
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1519.2 1179 65.2
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1516.9 1179 64.2
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1515.0 1199 63.1
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1514.2 1214 62.9
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1512.3 1195 63.1
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1511.9 1194 63.9
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1510.4 1227 62.4
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1510.0 1196 62.8
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1508.8 1196 63.0
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1507.7 1195 63.3
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1507.3 1195 63.6
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1506.9 1200 62.8
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1506.9 1190 63.1
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1504.6 1178 64.7
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1503.4 1198 61.9
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1503.0 1196 62.9
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1496.9 1200 62.2
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1488.8 1202 62.0
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1485.3 1228 60.5
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1482.6 1182 62.8
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1478.8 1198 62.5
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1477.6 1144 63.4
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1477.2 1195 62.7
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1476.5 1202 62.6
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1476.1 1182 61.9
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1474.9 1197 61.2
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1469.9 1199 62.2
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1468.8 1202 62.6
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1468.0 1202 61.0
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1466.8 1195 62.5
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1464.9 1315 58.3
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1464.5 1195 62.1
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1461.8 1197 62.1
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1458.4 1180 61.9
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1457.2 1197 61.2
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1456.8 1194 61.8
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1455.7 1202 60.5
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1449.1 1203 60.5
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1448.3 1238 59.0
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1448.3 1152 61.8
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1445.6 1266 58.5
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1443.3 1198 60.6
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1440.2 1205 60.7
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1437.9 1205 60.6
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1430.2 1196 61.1
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1426.8 1135 62.4
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1424.5 1210 60.1
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1421.0 1220 59.7
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1414.8 1227 58.4
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1402.9 1200 59.0
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1393.6 1193 59.1
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1373.2 1214 58.1
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1369.0 1024 67.1
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1365.9 1196 58.9
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1359.4 1023 66.5
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1332.8 1274 54.9
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1291.2 982 65.3
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1275.8 969 66.0
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1239.6 1170 55.9
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1188.3 1202 50.7
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1184.1 1195 50.9
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1138.3 1192 52.8
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1122.1 1195 49.0
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1099.7 1179 52.1
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1097.0 1203 51.1
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1095.1 1216 48.5
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 3.5e-305 1052.0 831 62.5
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 7.9e-273 944.5 863 56.9
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 1.1e-269 934.1 776 61.5
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.7e-265 919.5 716 63.7
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 2.0e-255 886.7 1118 44.4
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 2.9e-251 872.8 711 62.0
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 5.7e-231 805.4 1091 41.8
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 2.6e-207 726.9 583 64.3
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 5.0e-203 712.6 1176 39.2
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 5.6e-194 682.6 565 62.8
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.9e-189 667.5 473 69.3
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.5e-186 657.9 485 67.8
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.6e-185 654.4 753 48.6
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.1e-141 508.8 387 65.1
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 2.7e-140 504.2 411 62.5
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 3.7e-129 467.2 715 40.6
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 9.1e-120 436.0 586 44.0
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 2.3e-94 351.7 258 65.1
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 4.7e-84 317.4 381 46.5
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 5.8e-66 257.3 274 52.9
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.2e-55 223.0 175 62.3
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 2.5e-53 215.3 202 56.4
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 9.6e-53 213.4 285 42.5
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 1.3e-49 203.0 290 41.4
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 4.2e-40 171.4 139 60.4
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 6.0e-39 167.5 232 43.5
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 6.7e-22 110.9 72 66.7
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 3.3e-21 108.6 135 44.4
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.7e-20 106.3 146 43.2
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 3.8e-17 95.1 201 34.3
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 6.7e-14 84.3 322 23.6
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 5.9e-10 71.2 98 42.9
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 1.7e-09 69.7 62 56.5
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 5.0e-09 68.2 52 67.3
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 4.2e-08 65.1 45 66.7
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 7.2e-08 64.3 53 52.8
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 7.2e-08 64.3 56 60.7
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 3.0e-06 58.9 49 63.3


User provided reference genes

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