Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO349G0143 Papaver somniferum HOM05D000725 ORTHO05D004053 4.2e-271 937.6 522 100.0
PSO765G0016 Papaver somniferum HOM05D000725 ORTHO05D004053 9.1e-250 866.7 511 95.1
Nn2g14108 Nelumbo nucifera HOM05D000725 ORTHO05D004053 5.0e-54 216.5 305 40.0
QL08p063892 Quercus lobata HOM05D000725 ORTHO05D004053 1.9e-53 214.5 296 39.5
Aqoxy7G00421 Aquilegia oxysepala HOM05D000725 ORTHO05D004053 1.6e-52 211.5 314 40.4
CSS0025020 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 1.6e-52 211.5 249 43.4
ClCG07G004630 Citrullus lanatus HOM05D000725 ORTHO05D004053 3.9e-51 206.8 278 42.8
Sed0016433 Sechium edule HOM05D000725 ORTHO05D004053 2.5e-50 204.1 277 41.5
Cfa001267 Carpinus fangiana HOM05D000725 ORTHO05D004053 7.4e-50 202.6 296 38.5
Hma1.2p1_1013F.1_g247700 Hydrangea macrophylla HOM05D000725 ORTHO05D004053 8.2e-49 199.1 274 41.2
CANSAT56G0874 Cannabis sativa HOM05D000725 ORTHO05D004053 3.1e-48 197.2 299 37.5
Prupe.2G256800 Prunus persica HOM05D000725 ORTHO05D004053 6.9e-48 196.1 302 37.7
MELO3C018395.2 Cucumis melo HOM05D000725 ORTHO05D004053 1.5e-47 194.9 272 40.8
TWI73G1060 Tripterygium wilfordii HOM05D000725 ORTHO05D004053 1.5e-47 194.9 280 39.3
Potri.008G073500 Populus trichocarpa HOM05D000725 ORTHO05D004053 3.4e-47 193.7 327 34.9
Sabra08G0054700 Salix brachista HOM05D000725 ORTHO05D004053 3.4e-47 193.7 327 35.5
CsaV3_5G010570 Cucumis sativus L. HOM05D000725 ORTHO05D004053 5.9e-47 193.0 272 40.8
Ciclev10033966m.g Citrus clementina HOM05D000725 ORTHO05D004053 7.7e-47 192.6 272 39.7
Ciclev10030786m.g Citrus clementina HOM05D000725 ORTHO05D004053 3.8e-46 190.3 271 39.9
CiPaw.01G301800 Carya illinoinensis HOM05D000725 ORTHO05D004053 6.5e-46 189.5 263 40.7
vmacro06943 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 6.5e-46 189.5 273 38.8
Gohir.D06G166900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 8.5e-46 189.1 303 37.3
Lj8C62G8 Lonicera japonica HOM05D000725 ORTHO05D004053 1.1e-45 188.7 273 37.0
CAN.G830.1 Capsicum annuum HOM05D000725 ORTHO05D004053 1.4e-45 188.3 275 40.7
Rhsim03G0147600 Rhododendron simsii HOM05D000725 ORTHO05D004053 1.9e-45 188.0 277 39.0
GSVIVG01032746001 Vitis vinifera HOM05D000725 ORTHO05D004053 1.9e-45 188.0 294 38.4
Sopen06g016030 Solanum pennellii HOM05D000725 ORTHO05D004053 2.5e-45 187.6 272 40.8
Gorai.010G194700 Gossypium raimondii HOM05D000725 ORTHO05D004053 3.2e-45 187.2 302 37.1
Cc02_g05980 Coffea canephora HOM05D000725 ORTHO05D004053 5.5e-45 186.4 268 38.4
PGSC0003DMG400023950 Solanum tuberosum HOM05D000725 ORTHO05D004053 5.5e-45 186.4 272 39.7
HanXRQChr08g0221881 Helianthus annuus HOM05D000725 ORTHO05D004053 9.4e-45 185.7 280 35.4
Peaxi162Scf00284g00316 Petunia axillaris HOM05D000725 ORTHO05D004053 1.2e-44 185.3 275 41.1
Haze_17278 Corylus avellana HOM05D000725 ORTHO05D004053 1.6e-44 184.9 328 34.5
Haze_17287 Corylus avellana HOM05D000725 ORTHO05D004053 1.6e-44 184.9 328 34.5
Gohir.A06G160900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 2.1e-44 184.5 303 36.6
Solyc06g050510.3 Solanum lycopersicum HOM05D000725 ORTHO05D004053 3.6e-44 183.7 272 40.1
Lj1A961T79 Lonicera japonica HOM05D000725 ORTHO05D004053 6.1e-44 183.0 287 37.6
Sabra10G0141000 Salix brachista HOM05D000725 ORTHO05D004053 6.1e-44 183.0 309 35.3
RcHm_v2.0_Chr1g0371111 Rosa chinensis HOM05D000725 ORTHO05D004053 7.9e-44 182.6 306 35.6
Atru.chr12.108 Acer truncatum HOM05D000725 ORTHO05D004053 1.8e-43 181.4 277 35.7
Manes.10G007800 Manihot esculenta HOM05D000725 ORTHO05D004053 1.8e-43 181.4 269 36.4
Nitab4.5_0001817g0060 Nicotiana tabacum HOM05D000725 ORTHO05D004053 1.8e-43 181.4 272 39.0
COL.COLO4_25795 Corchorus olitorius HOM05D000725 ORTHO05D004053 3.0e-43 180.6 310 34.5
Duzib114G0648 Durio zibethinus HOM05D000725 ORTHO05D004053 3.9e-43 180.3 303 34.3
Nitab4.5_0000058g0030 Nicotiana tabacum HOM05D000725 ORTHO05D004053 3.9e-43 180.3 272 38.6
Thecc.10G009700 Theobroma cacao HOM05D000725 ORTHO05D004053 1.1e-42 178.7 301 36.5
vmacro10000 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 2.0e-42 177.9 249 38.6
MSTRG.8922 Avicennia marina HOM05D000725 ORTHO05D004053 5.7e-42 176.4 308 35.7
DCAR_011852 Daucus carota HOM05D000725 ORTHO05D004053 9.7e-42 175.6 263 37.3
FAN10G2086 Fragaria x ananassa HOM05D000725 ORTHO05D004053 1.3e-41 175.3 313 34.8
Ca_05997_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 1.7e-41 174.9 274 35.8
FAN06G2284 Fragaria x ananassa HOM05D000725 ORTHO05D004053 1.7e-41 174.9 306 35.3
Oeu023910.1 Olea europaea HOM05D000725 ORTHO05D004053 1.7e-41 174.9 279 38.7
FvH4_7g25190 Fragaria vesca HOM05D000725 ORTHO05D004053 2.2e-41 174.5 306 35.6
PGR044G2605 Punica granatum HOM05D000725 ORTHO05D004053 2.8e-41 174.1 268 38.8
Actinidia00658 Actinidia chinensis HOM05D000725 ORTHO05D004053 3.7e-41 173.7 268 36.6
FAN03G2016 Fragaria x ananassa HOM05D000725 ORTHO05D004053 8.2e-41 172.6 313 34.5
Duzib106G0872 Durio zibethinus HOM05D000725 ORTHO05D004053 1.1e-40 172.2 300 34.0
Rhsim09G0180400 Rhododendron simsii HOM05D000725 ORTHO05D004053 1.4e-40 171.8 285 36.1
Lsat_1_v5_gn_8_13121 Lactuca sativa HOM05D000725 ORTHO05D004053 1.8e-40 171.4 281 36.3
Phvul.008G220500 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 2.4e-40 171.0 280 38.6
SGA_v2.0_scaffold437G51620 Striga asiatica HOM05D000725 ORTHO05D004053 3.1e-40 170.6 270 38.9
Thhalv10012460m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 5.3e-40 169.9 272 34.6
VMungo0647G1332 Vigna mungo HOM05D000725 ORTHO05D004053 5.3e-40 169.9 287 38.0
Lj6g0013892 Lotus japonicus HOM05D000725 ORTHO05D004053 9.1e-40 169.1 270 35.2
vmacro09999 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 9.1e-40 169.1 250 39.2
Migut.F00630 Erythranthe guttata HOM05D000725 ORTHO05D004053 2.6e-39 167.5 281 38.4
Glyma.U027200 Glycine max HOM05D000725 ORTHO05D004053 3.5e-39 167.2 272 35.3
Glyma.02G261800 Glycine max HOM05D000725 ORTHO05D004053 5.9e-39 166.4 279 37.3
Phvul.001G246400 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 5.9e-39 166.4 256 39.5
Lsat_1_v5_gn_8_13481 Lactuca sativa HOM05D000725 ORTHO05D004053 1.0e-38 165.6 277 35.4
SGA_v2.0_scaffold618G53215 Striga asiatica HOM05D000725 ORTHO05D004053 1.3e-38 165.2 273 35.2
TPR.G8343 Trifolium pratense HOM05D000725 ORTHO05D004053 1.7e-38 164.9 273 36.3
ECA233G5578 Erigeron canadensis HOM05D000725 ORTHO05D004053 2.2e-38 164.5 311 31.2
Medtr5g083300 Medicago truncatula HOM05D000725 ORTHO05D004053 2.2e-38 164.5 277 35.0
LjContig00357g0008885 Lotus japonicus HOM05D000725 ORTHO05D004053 2.9e-38 164.1 281 34.5
Lalb_Chr10g0105301 Lupinus albus HOM05D000725 ORTHO05D004053 3.8e-38 163.7 275 36.0
arahy.Tifrunner.gnm1.ann1.MF2MUZ Arachis hypogaea HOM05D000725 ORTHO05D004053 6.5e-38 162.9 312 32.4
arahy.Tifrunner.gnm1.ann1.Y9Z9L7 Arachis hypogaea HOM05D000725 ORTHO05D004053 6.5e-38 162.9 312 32.4
THA.LOC104811007 Tarenaya hassleriana HOM05D000725 ORTHO05D004053 8.5e-38 162.5 312 32.7
Lalb_Chr17g0346921 Lupinus albus HOM05D000725 ORTHO05D004053 1.1e-37 162.2 275 34.5
AL5G20900 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 4.2e-37 160.2 300 34.0
A10p19550 Brassica napus HOM05D000725 ORTHO05D004053 5.5e-37 159.8 237 34.6
BolC9t58445H Brassica oleracea HOM05D000725 ORTHO05D004053 5.5e-37 159.8 265 32.8
BcaC04g19431 Brassica carinata HOM05D000725 ORTHO05D004053 7.2e-37 159.5 237 34.6
C09p55760 Brassica napus HOM05D000725 ORTHO05D004053 9.4e-37 159.1 237 34.6
BraA10t44031Z Brassica rapa HOM05D000725 ORTHO05D004053 9.4e-37 159.1 237 34.6
Cpa.g.sc19.122 Carica papaya HOM05D000725 ORTHO05D004053 1.2e-36 158.7 213 40.4
CARHR153700 Cardamine hirsuta HOM05D000725 ORTHO05D004053 1.6e-36 158.3 301 33.9
unitig_46.g18735 Utricularia gibba HOM05D000725 ORTHO05D004053 4.7e-36 156.8 238 37.4
AT3G42670 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 8.0e-36 156.0 262 35.5
AT5G20420 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 1.0e-35 155.6 241 34.9
Carub.0006s1880 Capsella rubella HOM05D000725 ORTHO05D004053 1.0e-35 155.6 279 31.9
BcaB08g36500 Brassica carinata HOM05D000725 ORTHO05D004053 1.8e-35 154.8 237 33.8
Psat2g030640 Pisum sativum HOM05D000725 ORTHO05D004053 1.8e-35 154.8 277 34.3
AUR62022951 Chenopodium quinoa HOM05D000725 ORTHO05D004053 2.3e-35 154.5 251 37.5
arahy.Tifrunner.gnm1.ann1.89IITC Arachis hypogaea HOM05D000725 ORTHO05D004053 3.9e-35 153.7 314 33.4
AUR62012311 Chenopodium quinoa HOM05D000725 ORTHO05D004053 3.9e-35 153.7 251 37.1
AL6G31990 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 8.8e-35 152.5 241 34.0
Sp6g24000 Schrenkiella parvula HOM05D000725 ORTHO05D004053 1.1e-34 152.1 241 33.6
arahy.Tifrunner.gnm1.ann1.M7CALB Arachis hypogaea HOM05D000725 ORTHO05D004053 1.5e-34 151.8 316 31.6
Aa31LG1G14210 Aethionema arabicum HOM05D000725 ORTHO05D004053 3.3e-34 150.6 301 30.6
Thhalv10024231m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 7.4e-34 149.4 303 31.4
SHI28808 Sapria himalayana HOM05D000725 ORTHO05D004053 9.7e-34 149.1 251 35.1
EL10Ac2g04901 Beta vulgaris HOM05D000725 ORTHO05D004053 1.7e-33 148.3 236 37.3
Nn5g29006 Nelumbo nucifera HOM05D000725 ORTHO05D004053 2.8e-33 147.5 168 44.0
Nn1g09202 Nelumbo nucifera HOM05D000725 ORTHO05D004053 4.8e-33 146.7 174 41.4
Glyma.18G023900 Glycine max HOM05D000725 ORTHO05D004053 6.3e-33 146.4 243 36.2
Hund13529 Selenicereus undatus HOM05D000725 ORTHO05D004053 6.3e-33 146.4 245 36.7
Sc11g0005370 Simmondsia chinensis HOM05D000725 ORTHO05D004053 6.3e-33 146.4 248 36.3
Medtr3g071860 Medicago truncatula HOM05D000725 ORTHO05D004053 8.2e-33 146.0 283 34.6
Eucgr.J00168 Eucalyptus grandis HOM05D000725 ORTHO05D004053 1.4e-32 145.2 278 35.3
Sp7g16860 Schrenkiella parvula HOM05D000725 ORTHO05D004053 1.8e-32 144.8 267 33.0
Actinidia29727 Actinidia chinensis HOM05D000725 ORTHO05D004053 3.1e-32 144.1 255 36.1
BolC8t48449H Brassica oleracea HOM05D000725 ORTHO05D004053 3.1e-32 144.1 271 33.2
CARHR192380 Cardamine hirsuta HOM05D000725 ORTHO05D004053 3.1e-32 144.1 239 33.1
Cc06_g20020 Coffea canephora HOM05D000725 ORTHO05D004053 1.2e-31 142.1 215 39.1
A08p12990 Brassica napus HOM05D000725 ORTHO05D004053 4.5e-31 140.2 270 31.5
Carub.0008s1899 Capsella rubella HOM05D000725 ORTHO05D004053 7.7e-31 139.4 300 30.7
BraA08t33283Z Brassica rapa HOM05D000725 ORTHO05D004053 6.5e-30 136.3 270 31.1
Ca_05999_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 1.6e-28 131.7 202 36.1
Potri.010G183766 Populus trichocarpa HOM05D000725 ORTHO05D004053 2.1e-28 131.3 165 39.4
CARHR153740 Cardamine hirsuta HOM05D000725 ORTHO05D004053 6.1e-28 129.8 260 31.2
Psat5g144960 Pisum sativum HOM05D000725 ORTHO05D004053 1.8e-27 128.3 285 30.9
Medtr7g026650 Medicago truncatula HOM05D000725 ORTHO05D004053 2.3e-27 127.9 287 35.2
Ah.16g103940 Amaranthus hybridus HOM05D000725 ORTHO05D004053 5.2e-27 126.7 198 37.4
Nn1g06958 Nelumbo nucifera HOM05D000725 ORTHO05D004053 8.8e-27 125.9 152 42.1
HPP92_003690 Vanilla planifolia HOM05D000725 ORTHO05D004053 1.7e-25 121.7 309 30.7
Lj6g0001238 Lotus japonicus HOM05D000725 ORTHO05D004053 4.8e-25 120.2 282 29.8
Nn6g34612 Nelumbo nucifera HOM05D000725 ORTHO05D004053 8.3e-25 119.4 158 39.2
Lj1g0026032 Lotus japonicus HOM05D000725 ORTHO05D004053 2.7e-23 114.4 234 32.5
Os07g0692600 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D004053 2.7e-23 114.4 293 28.3
Lj4g0016792 Lotus japonicus HOM05D000725 ORTHO05D004053 1.3e-22 112.1 280 28.2
TAR636G0222 Trochodendron aralioides HOM05D000725 ORTHO05D004053 3.8e-22 110.5 106 50.0
Zm00001eb331510 Zea mays HOM05D000725 ORTHO05D004053 2.5e-21 107.8 308 29.5
MBI04_g43202_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 2.1e-20 104.8 225 32.0
Medtr1g081750 Medicago truncatula HOM05D000725 ORTHO05D004053 2.1e-20 104.8 201 33.3
Nn2g12181 Nelumbo nucifera HOM05D000725 ORTHO05D004053 2.7e-20 104.4 130 43.1
Nn2g15117 Nelumbo nucifera HOM05D000725 ORTHO05D004053 5.2e-19 100.1 130 40.8
ATR0594G114 Amborella trichopoda HOM05D000725 ORTHO05D004053 7.5e-18 96.3 325 28.0
TPR.G30914 Trifolium pratense HOM05D026095 ORTHO05D004053 2.2e-17 94.7 159 34.0
Carub.0005s0881 Capsella rubella HOM05D000725 ORTHO05D004053 1.4e-16 92.0 198 30.3
Nn2g14179 Nelumbo nucifera HOM05D002850 ORTHO05D004053 5.4e-16 90.1 94 47.9
Aa31LG4G13300 Aethionema arabicum HOM05D000725 ORTHO05D004053 2.5e-13 81.3 87 47.1
MBI04_g44603_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 1.2e-12 79.0 136 36.8
CSS0048207 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 1.8e-11 75.1 140 35.0
TPR.G35061 Trifolium pratense HOM05D000725 ORTHO05D004053 6.8e-11 73.2 116 36.2
Actinidia33901 Actinidia chinensis HOM05D000725 ORTHO05D004053 2.0e-10 71.6 80 41.2
Rhsim03G0253900 Rhododendron simsii HOM05D023492 ORTHO05D023105 1.2e-07 62.4 58 48.3
SMO115G0151 Selaginella moellendorffii HOM05D000725 ORTHO05D004053 1.0e-06 59.3 69 36.2
AagrBONN_evm.TU.Sc2ySwM_340.163 Anthoceros agrestis HOM05D000725 ORTHO05D021317 3.9e-06 57.4 79 36.7


User provided reference genes

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