Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 2.4e-153 545.4 269 100.0
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 5.7e-147 524.2 265 97.7
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 2.7e-104 382.5 271 69.7
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 3.4e-99 365.5 269 69.1
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 7.4e-94 347.8 269 65.8
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 6.2e-93 344.7 264 66.7
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 8.1e-93 344.4 265 67.2
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.4e-92 343.6 276 64.9
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 4.0e-92 342.0 264 65.5
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 4.5e-91 338.6 259 65.6
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 1.7e-90 336.7 265 63.4
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 3.2e-89 332.4 267 63.7
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 3.5e-88 328.9 264 63.3
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 6.0e-88 328.2 272 61.8
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 7.9e-88 327.8 269 61.7
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 1.8e-87 326.6 272 62.9
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 3.9e-87 325.5 266 62.4
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 1.1e-86 323.9 263 62.4
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 2.5e-86 322.8 264 61.7
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 1.3e-85 320.5 267 60.3
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 1.3e-85 320.5 262 62.6
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 1.3e-85 320.5 264 61.0
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 2.1e-85 319.7 272 63.6
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 2.1e-85 319.7 269 60.2
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 4.8e-85 318.5 268 59.7
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 4.8e-85 318.5 267 60.7
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 6.2e-85 318.2 263 59.3
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 2.0e-83 313.2 277 62.1
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 2.6e-83 312.8 263 60.1
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 2.6e-83 312.8 266 60.5
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 2.6e-83 312.8 266 60.5
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 3.4e-83 312.4 267 58.4
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 4.5e-83 312.0 270 59.6
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 1.3e-82 310.5 272 59.6
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 2.2e-82 309.7 271 57.2
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 4.9e-82 308.5 282 57.1
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 6.5e-82 308.1 266 59.8
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 1.2e-80 303.9 270 59.3
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 3.5e-80 302.4 263 58.6
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 7.9e-80 301.2 272 57.7
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 1.8e-79 300.1 284 54.9
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 1.1e-78 297.4 267 57.7
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 4.3e-78 295.4 266 56.0
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 1.3e-77 293.9 269 57.2
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 1.6e-77 293.5 269 56.9
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 2.8e-77 292.7 262 57.6
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 4.8e-77 292.0 262 59.2
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 4.8e-77 292.0 267 56.6
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 8.2e-77 291.2 262 58.4
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 1.8e-76 290.0 274 56.9
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 2.4e-76 289.7 262 58.0
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 3.1e-76 289.3 264 58.3
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 4.1e-76 288.9 262 58.0
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 6.9e-76 288.1 262 57.6
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.2e-75 287.3 262 56.5
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 2.0e-75 286.6 265 56.2
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 4.5e-75 285.4 303 51.5
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 5.9e-75 285.0 274 56.6
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 1.0e-74 284.3 227 64.3
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 1.3e-74 283.9 267 56.6
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 2.9e-74 282.7 252 59.5
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 2.9e-74 282.7 249 60.6
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 6.5e-74 281.6 265 57.0
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 1.1e-73 280.8 268 54.9
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 1.1e-73 280.8 265 55.5
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 5.5e-73 278.5 215 64.2
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 6.1e-72 275.0 191 70.2
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 1.8e-71 273.5 266 54.5
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 1.8e-71 273.5 268 56.3
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 3.0e-71 272.7 269 55.4
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 6.7e-71 271.6 217 62.2
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 1.1e-70 270.8 278 53.6
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 1.5e-70 270.4 191 67.5
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 3.3e-70 269.2 271 53.5
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 1.6e-69 266.9 279 51.6
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 2.8e-69 266.2 253 56.5
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 1.8e-68 263.5 212 61.8
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 3.4e-67 259.2 264 50.4
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 4.5e-67 258.8 274 51.8
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 4.5e-67 258.8 265 53.6
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 1.4e-65 253.8 191 66.0
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 5.5e-65 251.9 263 48.3
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 1.5e-62 243.8 263 49.4
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 1.3e-58 230.7 199 62.3
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 2.9e-58 229.6 268 46.3
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 5.5e-57 225.3 279 44.1
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 6.1e-56 221.9 131 74.8
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.4e-55 220.7 201 58.7
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 5.2e-55 218.8 210 57.1
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 9.7e-54 214.5 192 57.8
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 2.2e-53 213.4 254 48.8
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.1e-52 211.1 206 54.9
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.8e-52 210.3 191 58.1
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 1.6e-51 207.2 267 47.2
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 2.9e-50 203.0 180 59.4
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 5.5e-49 198.7 286 44.1
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 2.6e-46 189.9 322 40.1
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 3.5e-43 179.5 192 52.6
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 4.1e-36 156.0 267 41.2
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 4.1e-36 156.0 162 53.1
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 4.1e-36 156.0 139 58.3
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 7.0e-36 155.2 161 53.4
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 1.2e-35 154.5 161 54.0
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 9.5e-33 144.8 107 59.8
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 2.6e-30 136.7 139 56.8
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 1.7e-29 134.0 173 45.7
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 1.7e-29 134.0 250 36.0
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 1.2e-27 127.9 162 46.9
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 2.6e-22 110.2 173 35.8
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 4.9e-21 105.9 64 71.9
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 5.9e-19 99.0 65 69.2
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 6.6e-18 95.5 156 36.5
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 8.6e-18 95.1 217 34.6
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 4.4e-14 82.8 174 32.8
CBR_g45547 Chara braunii HOM05D003201 ORTHO05D008805 1.2e-11 74.7 268 29.5
Sed0004381 Sechium edule HOM05D007105 ORTHO05D009304 6.6e-10 68.9 209 27.3
arahy.Tifrunner.gnm1.ann1.C0VXQN Arachis hypogaea HOM05D007105 ORTHO05D009304 4.3e-09 66.2 211 28.9
arahy.Tifrunner.gnm1.ann1.E4PV4B Arachis hypogaea HOM05D007105 ORTHO05D009304 4.3e-09 66.2 211 28.9
QL12p002830 Quercus lobata HOM05D007105 ORTHO05D009304 9.5e-09 65.1 218 28.4
PGSC0003DMG400029377 Solanum tuberosum HOM05D007105 ORTHO05D009304 1.6e-08 64.3 220 27.7
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 2.8e-08 63.5 215 27.4
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 2.8e-08 63.5 215 27.4
Potri.003G106300 Populus trichocarpa HOM05D007105 ORTHO05D009304 2.8e-08 63.5 207 27.1
Solyc12g096230.2 Solanum lycopersicum HOM05D007105 ORTHO05D009304 2.8e-08 63.5 220 27.7
Sopen12g032090 Solanum pennellii HOM05D007105 ORTHO05D009304 2.8e-08 63.5 220 27.7
Phvul.002G123600 Phaseolus vulgaris HOM05D007105 ORTHO05D009304 3.6e-08 63.2 213 30.0
VMungo1215G3143 Vigna mungo HOM05D007105 ORTHO05D009304 4.7e-08 62.8 207 30.4
Nitab4.5_0006955g0010 Nicotiana tabacum HOM05D007105 ORTHO05D009304 6.2e-08 62.4 220 27.7
CAN.G947.23 Capsicum annuum HOM05D007105 ORTHO05D009304 8.1e-08 62.0 221 27.6
Peaxi162Scf00876g00218 Petunia axillaris HOM05D007105 ORTHO05D009304 1.4e-07 61.2 219 27.4
Aa31LG2G14440 Aethionema arabicum HOM05D007105 ORTHO05D009304 2.3e-07 60.5 209 27.3
arahy.Tifrunner.gnm1.ann1.IELT58 Arachis hypogaea HOM05D006806 ORTHO05D008448 8.9e-07 58.5 127 30.7
Carub.0001s2995 Capsella rubella HOM05D007105 ORTHO05D009304 8.9e-07 58.5 207 26.1
Thhalv10006757m.g Eutrema salsugineum HOM05D007105 ORTHO05D004932 8.9e-07 58.5 213 26.8
AL1G49460 Arabidopsis lyrata HOM05D007105 ORTHO05D009304 1.2e-06 58.2 207 26.1
arahy.Tifrunner.gnm1.ann1.68R93N Arachis hypogaea HOM05D006806 ORTHO05D008448 1.2e-06 58.2 127 30.7
Lsat_1_v5_gn_6_17400 Lactuca sativa HOM05D007105 ORTHO05D009304 2.0e-06 57.4 213 26.8
Medtr5g091920 Medicago truncatula HOM05D006806 ORTHO05D008448 3.4e-06 56.6 143 28.7


User provided reference genes

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