Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 5.2e-187 657.5 323 100.0
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 2.5e-181 638.6 323 97.2
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 4.6e-127 458.4 287 74.6
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 2.3e-126 456.1 314 69.7
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 3.1e-123 445.7 301 67.4
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.2e-122 443.7 301 67.1
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.5e-122 443.4 285 71.6
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 7.7e-122 441.0 287 69.7
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.9e-120 436.4 287 68.6
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.4e-118 430.3 298 67.4
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.3e-118 429.5 300 66.3
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 3.0e-118 429.1 309 64.1
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 5.1e-118 428.3 315 64.4
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 8.8e-118 427.6 320 64.4
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.5e-117 426.8 287 67.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 3.3e-117 425.6 313 64.5
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 4.4e-117 425.2 288 67.4
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 5.7e-117 424.9 302 64.6
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 2.2e-116 422.9 296 66.2
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 3.7e-116 422.2 308 64.6
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 4.8e-116 421.8 288 66.7
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 4.8e-116 421.8 288 67.0
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 8.2e-116 421.0 303 62.0
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.4e-115 420.2 308 64.3
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 4.1e-115 418.7 288 68.1
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 4.1e-115 418.7 287 66.2
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 6.9e-115 417.9 285 68.1
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 6.9e-115 417.9 306 63.1
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 2.0e-114 416.4 284 67.3
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 4.5e-114 415.2 321 63.9
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.3e-113 413.7 305 66.6
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.7e-113 413.3 303 66.0
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 5.0e-113 411.8 291 64.6
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 5.0e-113 411.8 287 67.2
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 6.5e-113 411.4 307 65.8
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 6.5e-113 411.4 285 66.7
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 2.5e-112 409.5 298 63.8
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 9.4e-112 407.5 284 65.8
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.6e-111 406.8 284 66.5
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 2.1e-111 406.4 311 62.7
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.8e-110 403.3 325 59.1
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 3.3e-109 399.1 297 64.0
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 3.3e-109 399.1 302 62.3
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 9.7e-109 397.5 281 64.4
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 3.7e-108 395.6 330 57.6
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.4e-107 393.7 298 62.8
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.8e-107 393.3 284 65.8
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 3.1e-107 392.5 299 63.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.2e-106 390.6 301 61.5
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.6e-106 390.2 298 63.1
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.6e-106 389.4 258 69.0
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.3e-105 387.1 307 59.6
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 2.9e-105 386.0 253 69.6
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 3.8e-105 385.6 300 60.7
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 3.2e-104 382.5 251 68.1
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 4.2e-104 382.1 333 57.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 5.5e-104 381.7 253 70.0
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 7.2e-104 381.3 298 60.1
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 9.4e-104 380.9 256 67.2
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.2e-103 380.6 247 70.0
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 4.7e-103 378.6 299 59.5
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 1.4e-102 377.1 260 67.3
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 4.0e-102 375.6 300 58.7
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 8.8e-102 374.4 300 59.3
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.2e-101 374.0 285 61.4
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 1.5e-101 373.6 305 58.7
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.6e-101 372.9 306 58.5
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 2.6e-101 372.9 300 58.0
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 3.3e-101 372.5 317 56.5
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 4.4e-101 372.1 300 57.7
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.7e-100 370.2 287 61.0
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 2.2e-100 369.8 306 57.8
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 3.7e-100 369.0 305 58.7
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 6.3e-100 368.2 300 57.7
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 1.8e-99 366.7 300 57.7
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 2.4e-99 366.3 300 58.0
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 9.1e-99 364.4 309 55.7
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 2.0e-98 363.2 285 58.2
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 2.0e-98 363.2 285 58.2
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 2.7e-98 362.8 285 58.2
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.6e-95 353.6 220 70.5
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.6e-93 346.3 296 55.7
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 8.3e-92 341.3 251 63.3
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 8.3e-92 341.3 251 62.9
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 4.7e-87 325.5 276 56.2
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 4.7e-87 325.5 280 55.7
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 6.1e-87 325.1 285 53.7
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 8.9e-86 321.2 308 52.9
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.5e-85 320.5 308 52.9
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.7e-84 317.0 296 53.0
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 2.7e-82 309.7 211 66.4
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.7e-81 307.0 191 73.3
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 2.9e-81 306.2 242 61.6
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 3.3e-80 302.8 301 52.2
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.3e-80 302.4 190 71.6
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 4.7e-79 298.9 294 48.0
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 4.7e-79 298.9 287 51.2
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.3e-76 290.8 283 53.7
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 6.4e-76 288.5 577 34.0
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 8.3e-76 288.1 278 47.8
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.4e-75 286.6 189 67.2
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 9.5e-72 274.6 164 75.6
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 2.8e-71 273.1 281 48.0
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 2.3e-70 270.0 299 43.8
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.4e-69 265.8 319 47.0
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 8.9e-62 241.5 153 69.3
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 9.9e-61 238.0 155 67.1
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.9e-56 223.8 243 50.2
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.7e-55 219.2 177 59.3
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.4e-54 217.6 243 48.6
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 2.6e-53 213.4 273 45.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 4.9e-52 209.1 148 62.2
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 6.4e-52 208.8 164 62.2
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 5.2e-46 189.1 132 65.9
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 3.9e-41 172.9 123 61.0
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 8.7e-41 171.8 216 36.1
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 4.3e-40 169.5 119 62.2
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.8e-38 164.1 148 54.1
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.0e-38 162.9 232 42.2
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.6e-37 160.2 195 44.1
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.3e-36 157.9 288 33.3
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.2e-34 151.4 108 66.7
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 7.9e-34 148.7 132 56.1
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.2e-29 134.8 101 65.3
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.4e-27 127.9 102 58.8
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 7.1e-27 125.6 76 68.4
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 3.5e-26 123.2 96 59.4
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.3e-20 104.8 76 61.8
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.7e-16 89.4 67 61.2
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 9.7e-16 88.6 156 37.2
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.8e-15 87.0 81 54.3
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 2.4e-14 84.0 81 58.0
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.2e-11 73.6 85 45.9
Pp3c6_8700 Physcomitrium patens HOM05D031523 ORTHO05D026640 1.6e-10 71.2 198 24.2


User provided reference genes

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