Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 4.5e-73 277.7 129 100.0
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 1.6e-70 269.2 127 97.6
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.8e-69 265.8 127 96.1
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 3.9e-69 264.6 127 96.1
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 8.7e-69 263.5 127 96.1
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.1e-68 263.1 127 96.1
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.5e-68 262.7 127 94.5
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.9e-68 262.3 127 93.7
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.5e-68 261.9 127 95.3
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.3e-68 261.5 127 94.5
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 4.3e-68 261.2 127 94.5
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 4.3e-68 261.2 127 95.3
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 4.3e-68 261.2 126 95.2
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 4.3e-68 261.2 126 95.2
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 5.7e-68 260.8 127 94.5
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 5.7e-68 260.8 127 94.5
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 5.7e-68 260.8 127 94.5
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 5.7e-68 260.8 127 93.7
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 5.7e-68 260.8 127 93.7
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 7.4e-68 260.4 127 93.7
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.4e-68 260.4 127 93.7
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.4e-68 260.4 127 93.7
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.4e-68 260.4 127 93.7
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 7.4e-68 260.4 127 94.5
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 9.7e-68 260.0 127 94.5
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 9.7e-68 260.0 127 93.7
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 9.7e-68 260.0 127 94.5
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 9.7e-68 260.0 127 94.5
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.3e-67 259.6 127 92.9
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.3e-67 259.6 127 92.9
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 1.3e-67 259.6 127 94.5
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.6e-67 259.2 128 90.6
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 2.2e-67 258.8 128 91.4
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 2.2e-67 258.8 127 94.5
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.2e-67 258.8 127 92.9
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.2e-67 258.8 127 92.9
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 2.2e-67 258.8 127 93.7
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 2.8e-67 258.5 127 92.9
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.8e-67 258.5 127 92.9
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 2.8e-67 258.5 127 93.7
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.8e-67 258.5 127 92.9
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.8e-67 258.5 127 92.9
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 2.8e-67 258.5 127 94.5
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.7e-67 258.1 127 93.7
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 3.7e-67 258.1 127 93.7
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 3.7e-67 258.1 127 92.9
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 3.7e-67 258.1 127 92.9
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 4.8e-67 257.7 126 92.9
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 4.8e-67 257.7 127 92.9
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 6.3e-67 257.3 127 93.7
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.3e-67 257.3 127 93.7
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.3e-67 257.3 127 93.7
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 6.3e-67 257.3 127 93.7
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 6.3e-67 257.3 127 93.7
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 8.2e-67 256.9 124 95.2
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 8.2e-67 256.9 127 92.1
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 8.2e-67 256.9 127 93.7
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 8.2e-67 256.9 127 92.9
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 8.2e-67 256.9 129 90.7
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 8.2e-67 256.9 127 92.9
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 8.2e-67 256.9 127 92.1
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.1e-66 256.5 127 92.9
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.4e-66 256.1 126 91.3
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.4e-66 256.1 126 92.1
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.8e-66 255.8 127 91.3
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.8e-66 255.8 127 92.1
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.8e-66 255.8 126 91.3
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.8e-66 255.8 127 89.8
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.4e-66 255.4 127 92.9
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 2.4e-66 255.4 127 92.9
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 2.4e-66 255.4 127 92.9
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 3.1e-66 255.0 127 92.1
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 3.1e-66 255.0 127 92.1
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.1e-66 255.0 127 92.1
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 3.1e-66 255.0 127 92.1
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 3.1e-66 255.0 126 92.9
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.1e-66 255.0 127 91.3
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 3.1e-66 255.0 127 91.3
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 4.1e-66 254.6 127 92.1
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 4.1e-66 254.6 127 90.6
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 4.1e-66 254.6 127 91.3
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 4.1e-66 254.6 127 90.6
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 5.3e-66 254.2 127 91.3
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 5.3e-66 254.2 127 91.3
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 5.3e-66 254.2 127 91.3
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 6.9e-66 253.8 127 91.3
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 6.9e-66 253.8 127 91.3
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 6.9e-66 253.8 127 91.3
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 9.1e-66 253.4 127 91.3
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 9.1e-66 253.4 127 91.3
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.5e-65 252.7 127 91.3
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.5e-65 252.7 127 90.6
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 2.0e-65 252.3 127 90.6
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 2.0e-65 252.3 127 90.6
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 2.0e-65 252.3 127 90.6
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 2.0e-65 252.3 127 90.6
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.0e-65 252.3 133 88.0
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 2.0e-65 252.3 127 90.6
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.6e-65 251.9 129 87.6
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 4.5e-65 251.1 127 89.0
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 5.9e-65 250.8 127 89.8
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 5.9e-65 250.8 127 89.8
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 7.7e-65 250.4 127 89.0
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 1.7e-64 249.2 129 89.9
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 2.2e-64 248.8 126 89.7
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 2.2e-64 248.8 127 87.4
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 2.9e-64 248.4 127 89.0
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.4e-63 246.1 127 88.2
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 6.1e-62 240.7 129 86.0
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 2.6e-60 235.3 127 84.3
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 7.4e-60 233.8 127 85.8
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 8.2e-59 230.3 125 82.4
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.4e-58 228.8 127 80.3
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.2e-57 226.5 125 80.8
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.9e-57 224.2 126 81.0
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.6e-54 216.1 110 90.0
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.6e-54 214.9 104 95.2
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.6e-54 214.9 104 95.2
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.1e-52 209.9 104 94.2
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.0e-52 209.1 104 94.2
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 5.7e-52 207.6 127 79.5
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 9.7e-52 206.8 104 93.3
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 8.2e-51 203.8 104 89.4
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 2.4e-50 202.2 104 89.4
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 2.4e-50 202.2 104 89.4
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 4.5e-49 198.0 127 70.1
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 2.9e-48 195.3 127 69.3
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.2e-44 183.3 124 66.1
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.6e-41 172.9 130 63.1
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 4.8e-35 151.4 128 53.1
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.2e-30 136.7 132 50.8
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 8.8e-29 130.6 124 48.4
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.2e-28 130.2 125 46.4
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.7e-28 127.9 134 44.0
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.7e-27 125.2 140 42.9
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 9.2e-26 120.6 64 85.9
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 4.5e-25 118.2 158 38.0
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 4.5e-25 118.2 153 39.9
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 4.3e-23 111.7 55 87.3
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 4.7e-22 108.2 56 83.9
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 3.0e-21 105.5 130 43.1
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 4.3e-15 85.1 49 77.6
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.7e-08 63.2 29 96.6
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 6.6e-08 61.2 29 93.1
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.3e-07 58.9 29 93.1
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 5.6e-07 58.2 31 80.6


User provided reference genes

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