Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 4251.4 2243 100.0
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 4167.5 2244 98.0
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2645.2 2303 64.6
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 2584.3 2287 63.7
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 2512.6 2281 63.1
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2451.0 2196 62.7
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2364.3 2277 59.9
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2301.9 2277 59.5
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2227.6 2267 58.1
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2206.8 2270 57.0
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2188.3 2266 57.9
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2167.5 2279 55.4
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2154.8 2271 56.0
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2141.7 2275 55.7
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2140.9 2260 57.4
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2136.7 2269 55.8
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2132.8 2227 56.0
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2109.3 2222 56.3
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2107.0 2280 55.4
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2098.6 2272 55.7
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2096.6 2277 54.6
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2095.9 2270 54.4
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2094.7 2273 56.5
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2078.9 2297 54.0
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2063.1 2327 53.2
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2053.9 2332 52.9
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2044.6 2313 54.1
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2044.2 2266 54.6
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2038.5 2345 52.4
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2032.3 2165 54.9
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2028.1 2272 53.3
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2026.9 1752 63.4
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2008.0 2263 53.5
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2001.5 2272 53.3
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 1989.9 2280 53.1
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 1984.1 2275 52.7
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 1983.8 2278 53.8
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1973.4 2278 52.3
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1965.3 2272 52.8
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 1958.7 2293 52.5
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1950.6 2143 53.5
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 1946.4 2268 52.1
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 1935.2 2274 51.8
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 1929.8 2306 51.5
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1928.3 2275 52.1
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1895.9 2278 51.1
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1891.7 2280 51.1
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1888.6 2279 51.3
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 1879.0 2279 51.4
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1860.9 1955 55.0
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1856.3 2271 51.0
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 1851.6 2349 49.8
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1849.3 2258 50.4
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1846.6 2265 50.7
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1845.9 2268 50.6
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1844.3 2275 50.5
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1826.2 2086 52.8
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1822.8 2083 53.0
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1822.8 2267 49.8
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1803.9 2278 49.4
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1800.0 2295 48.9
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1796.9 2277 49.8
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1794.2 2298 48.9
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1791.9 2222 50.0
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1786.5 2272 49.1
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1783.5 2248 49.9
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1781.5 2261 49.5
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1777.7 2288 47.8
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1764.6 2222 50.4
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1747.6 2271 47.8
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1746.5 1988 51.7
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1740.3 2051 51.2
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1735.3 1988 51.7
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1728.0 2178 50.3
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1723.4 2260 48.4
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1718.7 2270 47.4
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1708.7 2273 47.1
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1701.0 1990 50.1
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1697.6 1987 50.2
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1693.3 1983 51.0
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1689.1 2246 47.4
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1687.2 1392 63.4
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1683.7 1395 63.2
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1682.2 1395 63.2
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1677.5 2005 49.7
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1675.2 2265 47.8
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1671.8 2011 49.3
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1662.9 1986 49.4
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1657.5 2284 46.4
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1590.9 2273 46.7
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1555.8 1606 58.0
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1551.2 1427 60.0
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1378.2 1255 58.6
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1162.5 1516 49.4
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1137.5 1977 40.0
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 5.3e-286 989.2 819 64.3
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 4.7e-282 976.1 1413 46.5
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 1.2e-266 924.9 1310 47.3
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 1.7e-255 887.9 1304 46.0
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 2.0e-253 880.9 1323 43.4
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 1.6e-250 871.3 1156 44.6
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 5.2e-249 866.3 1433 45.1
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.2e-218 763.1 1005 48.3
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 2.4e-214 751.1 1782 33.8
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.6e-195 686.8 486 71.8
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.4e-172 612.5 1279 37.5
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.0e-148 533.1 426 64.1
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 9.1e-145 520.0 1678 29.9
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.9e-134 485.7 880 45.9
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 1.2e-133 483.0 1485 28.5
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.6e-133 482.6 880 45.8
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 1.8e-124 452.6 895 44.4
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 4.9e-122 444.5 1028 39.6
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 4.1e-121 441.4 343 69.1
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 2.7e-120 438.7 821 38.7
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.4e-108 399.8 652 41.0
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 1.1e-105 390.2 908 35.5
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 3.1e-100 372.1 1884 24.0
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 4.0e-100 371.7 305 64.3
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 2.7e-88 332.4 280 59.6
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-78 300.4 388 46.1
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 6.2e-77 294.7 215 67.4
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.8e-66 258.8 164 80.5
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.9e-65 256.5 336 44.9
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.5e-65 255.0 153 80.4
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 6.9e-60 238.0 336 42.3
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 3.4e-59 235.7 771 35.4
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 3.2e-49 202.6 208 53.8
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 2.4e-44 186.4 137 65.0
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 4.5e-43 182.2 334 36.5
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 1.7e-42 180.3 190 63.7
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.2e-40 174.1 103 83.5
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 6.8e-39 168.3 235 46.8
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 2.6e-38 166.4 471 37.4
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.4e-38 165.6 220 44.1
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.9e-35 155.2 358 33.5
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 6.5e-34 151.8 124 60.5
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 1.1e-33 151.0 465 40.2
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 4.2e-33 149.1 179 51.4
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.4e-28 133.3 548 27.7
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 4.5e-27 129.0 473 33.8
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.8e-24 119.8 396 32.3
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 5.2e-23 115.5 134 53.0
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 5.7e-22 112.1 68 75.0
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.6e-17 95.5 363 30.3
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 6.4e-13 82.0 134 42.5
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 1.1e-12 81.3 133 33.8
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 1.4e-12 80.9 204 30.9
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.3e-10 73.6 78 44.9
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 5.0e-10 72.4 116 41.4
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.8e-08 66.6 65 52.3
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 6.2e-08 65.5 83 45.8
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 5.2e-07 62.4 121 33.9
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 5.2e-07 62.4 45 68.9
SEGI_20776 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 3.4e-06 59.7 41 61.0


User provided reference genes

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