Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 2.3e-31 138.3 70 100.0
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 3.0e-31 137.9 70 98.6
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 9.1e-28 126.3 68 86.8
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 1.2e-27 125.9 68 88.2
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 1.5e-27 125.6 68 86.8
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 1.5e-27 125.6 68 86.8
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 1.5e-27 125.6 68 86.8
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 1.5e-27 125.6 68 86.8
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 2.0e-27 125.2 68 86.8
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 2.0e-27 125.2 68 89.7
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 2.6e-27 124.8 68 86.8
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 2.6e-27 124.8 68 85.3
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 3.4e-27 124.4 68 86.8
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 3.4e-27 124.4 68 86.8
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 3.4e-27 124.4 68 88.2
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 3.4e-27 124.4 69 82.6
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 3.4e-27 124.4 68 86.8
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 3.4e-27 124.4 68 86.8
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 3.4e-27 124.4 68 86.8
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 3.4e-27 124.4 68 86.8
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 4.5e-27 124.0 68 85.3
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 5.9e-27 123.6 68 88.2
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 7.7e-27 123.2 68 83.8
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 7.7e-27 123.2 68 83.8
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 1.0e-26 122.9 68 82.4
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 1.0e-26 122.9 68 85.3
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 1.3e-26 122.5 68 85.3
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 1.3e-26 122.5 70 81.4
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 1.3e-26 122.5 68 82.4
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 1.3e-26 122.5 68 83.8
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 1.3e-26 122.5 68 85.3
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 1.7e-26 122.1 68 82.4
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 1.7e-26 122.1 68 82.4
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 2.2e-26 121.7 68 83.8
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 2.9e-26 121.3 68 82.4
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 2.9e-26 121.3 68 85.3
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 2.9e-26 121.3 68 83.8
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 3.8e-26 120.9 68 83.8
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 3.8e-26 120.9 68 82.4
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.8e-26 120.9 68 82.4
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.8e-26 120.9 68 82.4
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.8e-26 120.9 68 82.4
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.8e-26 120.9 68 82.4
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 3.8e-26 120.9 68 80.9
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 3.8e-26 120.9 68 82.4
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 3.8e-26 120.9 68 82.4
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 5.0e-26 120.6 68 83.8
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 5.0e-26 120.6 68 82.4
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 6.5e-26 120.2 68 82.4
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 6.5e-26 120.2 68 82.4
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 8.5e-26 119.8 69 81.2
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 8.5e-26 119.8 68 83.8
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 8.5e-26 119.8 68 80.9
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 8.5e-26 119.8 68 82.4
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 1.1e-25 119.4 68 80.9
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 1.1e-25 119.4 68 83.8
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 1.4e-25 119.0 68 80.9
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 1.4e-25 119.0 68 83.8
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 1.4e-25 119.0 68 80.9
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 1.4e-25 119.0 68 79.4
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 1.4e-25 119.0 68 83.8
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.4e-25 119.0 68 80.9
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.4e-25 119.0 68 82.4
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.9e-25 118.6 68 82.4
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.9e-25 118.6 68 82.4
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.9e-25 118.6 68 83.8
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.9e-25 118.6 68 82.4
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.9e-25 118.6 68 82.4
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 1.9e-25 118.6 68 82.4
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 1.9e-25 118.6 68 82.4
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.9e-25 118.6 68 83.8
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 2.5e-25 118.2 68 82.4
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 2.5e-25 118.2 68 80.9
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 3.2e-25 117.9 68 82.4
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 3.2e-25 117.9 68 80.9
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 4.2e-25 117.5 67 82.1
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 4.2e-25 117.5 67 82.1
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 4.2e-25 117.5 68 80.9
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 4.2e-25 117.5 68 79.4
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 4.2e-25 117.5 68 79.4
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 5.5e-25 117.1 68 77.9
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 5.5e-25 117.1 68 83.8
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 5.5e-25 117.1 70 80.0
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 7.2e-25 116.7 68 82.4
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 7.2e-25 116.7 68 82.4
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 7.2e-25 116.7 68 82.4
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 7.2e-25 116.7 68 82.4
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 9.4e-25 116.3 68 82.4
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 9.4e-25 116.3 68 82.4
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 9.4e-25 116.3 70 81.4
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 1.2e-24 115.9 68 80.9
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 1.2e-24 115.9 68 80.9
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 1.2e-24 115.9 68 80.9
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 1.6e-24 115.5 68 82.4
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 1.6e-24 115.5 68 82.4
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 1.6e-24 115.5 68 82.4
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 1.6e-24 115.5 68 82.4
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.6e-24 115.5 68 79.4
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 3.6e-24 114.4 67 79.1
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 4.7e-24 114.0 68 80.9
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 4.7e-24 114.0 68 80.9
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 4.7e-24 114.0 68 76.5
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 4.7e-24 114.0 68 77.9
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 4.7e-24 114.0 68 77.9
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 6.1e-24 113.6 68 80.9
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 1.0e-23 112.8 70 80.0
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 1.4e-23 112.5 68 80.9
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 1.4e-23 112.5 68 80.9
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 1.4e-23 112.5 68 77.9
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 1.4e-23 112.5 68 77.9
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 2.3e-23 111.7 68 77.9
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 2.3e-23 111.7 68 76.5
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 3.0e-23 111.3 68 76.5
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 3.0e-23 111.3 68 76.5
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 3.0e-23 111.3 68 76.5
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 3.0e-23 111.3 68 76.5
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 3.0e-23 111.3 68 75.0
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 3.9e-23 110.9 68 77.9
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 5.1e-23 110.5 68 72.1
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 5.1e-23 110.5 68 76.5
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 6.7e-23 110.2 68 76.5
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 6.7e-23 110.2 68 75.0
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 6.7e-23 110.2 68 75.0
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 6.7e-23 110.2 68 75.0
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 6.7e-23 110.2 68 75.0
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 6.7e-23 110.2 68 75.0
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 6.7e-23 110.2 68 77.9
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 6.7e-23 110.2 68 77.9
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 6.7e-23 110.2 68 77.9
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 8.8e-23 109.8 68 76.5
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 8.8e-23 109.8 68 77.9
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 1.1e-22 109.4 68 73.5
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 1.1e-22 109.4 68 73.5
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 1.5e-22 109.0 68 73.5
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 2.0e-22 108.6 68 76.5
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 2.0e-22 108.6 68 73.5
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 2.6e-22 108.2 68 76.5
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 2.6e-22 108.2 68 76.5
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 2.6e-22 108.2 70 72.9
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 3.3e-22 107.8 68 72.1
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 3.3e-22 107.8 68 72.1
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 4.4e-22 107.5 68 75.0
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 5.7e-22 107.1 70 70.0
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 7.4e-22 106.7 95 60.0
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 7.4e-22 106.7 68 75.0
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 1.3e-21 105.9 68 72.1
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 2.2e-21 105.1 68 72.1
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 3.7e-21 104.4 67 76.1
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 3.4e-19 97.8 70 71.4
Lsat_1_v5_gn_9_36141 Lactuca sativa HOM05D001534 ORTHO05D004495 5.9e-19 97.1 53 81.1
Oeu007990.1 Olea europaea HOM05D001534 ORTHO05D004495 2.1e-16 88.6 49 81.6
Oeu019637.1 Olea europaea HOM05D001534 ORTHO05D004495 6.1e-16 87.0 49 81.6
Psat5g174000 Pisum sativum HOM05D001534 ORTHO05D004495 1.0e-15 86.3 49 81.6
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 8.8e-15 83.2 69 52.2
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 1.1e-14 82.8 69 56.5
arahy.Tifrunner.gnm1.ann1.UV2YJP Arachis hypogaea HOM05D001534 ORTHO05D004495 2.0e-14 82.0 69 60.9
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 2.0e-14 82.0 69 53.6
Actinidia35374 Actinidia chinensis HOM05D001534 ORTHO05D004495 2.6e-14 81.6 49 77.6
Nn5g26968 Nelumbo nucifera HOM05D001534 ORTHO05D004495 7.4e-14 80.1 68 64.7
A03p56890 Brassica napus HOM05D001534 ORTHO05D004495 1.7e-13 79.0 49 73.5
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 2.8e-13 78.2 69 52.2
FAN25G3175 Fragaria x ananassa HOM05D001534 ORTHO05D004495 4.8e-13 77.4 58 65.5
CBR_g41757 Chara braunii HOM05D001534 ORTHO05D004495 1.8e-12 75.5 69 52.2
Hma1.2p1_3177F.1_g333625 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 7.0e-12 73.6 49 71.4
CsaV3_1G040420 Cucumis sativus L. HOM05D001534 ORTHO05D004495 1.3e-10 69.3 36 83.3
Rhsim06G0224400 Rhododendron simsii HOM05D002795 ORTHO05D003219 2.2e-10 68.6 36 86.1
AagrBONN_evm.TU.Sc2ySwM_368.1120 Anthoceros agrestis HOM05D001534 ORTHO05D004495 5.0e-10 67.4 65 52.3
A01p17980 Brassica napus HOM05D001534 ORTHO05D004495 6.5e-10 67.0 37 81.1
BraA01t01753Z Brassica rapa HOM05D001534 ORTHO05D004495 6.5e-10 67.0 37 81.1
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 2.5e-09 65.1 35 85.7
Mapoly0058s0087 Marchantia polymorpha HOM05D001534 ORTHO05D004495 2.5e-09 65.1 68 41.2
SGA_v2.0_scaffold478G52224 Striga asiatica HOM05D001534 ORTHO05D004495 1.4e-07 59.3 34 79.4
Aa31LG3G11260 Aethionema arabicum HOM05D001534 ORTHO05D004495 2.3e-07 58.5 34 76.5
Sabra16G0237300 Salix brachista HOM05D001534 ORTHO05D004495 5.2e-07 57.4 34 70.6
Mapoly0008s0011 Marchantia polymorpha HOM05D001534 ORTHO05D004495 2.0e-06 55.5 65 41.5
Nitab4.5_0001049g0020 Nicotiana tabacum HOM05D001534 ORTHO05D004495 3.3e-06 54.7 33 78.8
Lalb_Chr20g0115821 Lupinus albus HOM05D001534 ORTHO05D004495 4.4e-06 54.3 34 70.6
vmacro09683 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 5.7e-06 53.9 37 73.0
MCO11G509 Micromonas commoda HOM05D001534 ORTHO05D004495 9.7e-06 53.1 61 49.2


User provided reference genes

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