Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 0.0e+00 1429.1 709 100.0
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 0.0e+00 1358.6 709 94.8
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 0.0e+00 1106.3 721 74.5
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 0.0e+00 1075.8 722 73.7
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 4.9e-312 1073.9 716 72.8
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 9.7e-312 1072.8 716 72.8
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 4.8e-310 1067.4 718 71.6
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 3.1e-309 1064.7 719 72.2
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 5.3e-309 1063.9 716 72.1
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 3.9e-304 1047.7 720 70.7
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 1.7e-302 1042.3 719 70.0
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 1.4e-301 1039.3 721 70.7
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 1.2e-300 1036.2 725 69.2
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.0e-299 1033.1 708 71.0
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 8.5e-299 1030.0 707 69.7
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 7.2e-298 1026.9 714 69.0
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 2.1e-297 1025.4 709 69.4
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.1e-295 1019.6 715 69.7
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 1.1e-295 1019.6 716 70.3
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 1.5e-295 1019.2 715 69.7
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 1.5e-295 1019.2 657 75.2
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 5.0e-291 1004.2 716 68.4
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 6.5e-291 1003.8 715 69.8
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 1.6e-289 999.2 716 68.4
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 6.1e-289 997.3 716 69.0
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 1.4e-288 996.1 709 67.8
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 1.8e-288 995.7 716 68.9
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 6.7e-288 993.8 726 67.5
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 1.5e-287 992.6 716 66.6
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 9.7e-287 989.9 712 67.7
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 3.7e-286 988.0 722 67.5
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.1e-285 986.5 713 68.2
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 1.6e-284 982.6 721 67.3
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 5.9e-284 980.7 720 66.5
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 5.9e-284 980.7 711 67.1
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.0e-283 979.9 715 66.7
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 1.0e-283 979.9 704 69.7
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 1.3e-283 979.5 719 67.3
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 8.0e-281 970.3 716 67.7
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 2.3e-280 968.8 701 68.3
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 2.3e-280 968.8 720 65.7
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 3.0e-280 968.4 705 67.2
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 4.0e-280 968.0 720 66.0
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.5e-279 966.1 712 65.6
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 9.7e-279 963.4 720 66.0
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 2.2e-278 962.2 710 65.9
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 2.8e-278 961.8 705 67.1
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 2.8e-278 961.8 720 65.7
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 4.8e-278 961.1 720 65.1
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 3.1e-277 958.4 720 67.1
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 7.0e-277 957.2 724 63.8
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 1.6e-276 956.1 717 65.6
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 3.8e-275 951.4 711 64.6
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.5e-274 949.5 715 63.8
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 3.2e-274 948.3 715 64.3
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.8e-272 942.6 629 71.1
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 3.0e-272 941.8 706 64.2
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 5.2e-272 941.0 714 63.2
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 2.6e-271 938.7 719 65.0
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 5.7e-271 937.6 712 63.8
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 3.7e-270 934.9 715 64.2
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 4.8e-270 934.5 730 63.8
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 8.3e-270 933.7 715 65.0
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.1e-269 933.3 714 63.4
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 2.4e-269 932.2 714 63.4
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 7.0e-269 930.6 719 62.6
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.6e-268 929.5 715 63.2
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 2.0e-268 929.1 716 63.1
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 3.5e-268 928.3 708 63.4
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 3.5e-268 928.3 720 64.2
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.3e-267 926.4 708 63.3
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.5e-266 922.9 724 63.3
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 2.1e-265 919.1 716 63.0
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.1e-265 919.1 983 52.2
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 4.7e-265 917.9 732 61.7
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 5.7e-263 911.0 652 68.1
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 7.5e-263 910.6 732 60.8
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 9.8e-263 910.2 723 61.3
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.0e-260 902.5 710 65.2
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 8.0e-257 890.6 720 60.3
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 1.8e-256 889.4 728 60.3
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 5.2e-256 887.9 706 62.7
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 7.5e-255 884.0 727 61.8
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 9.2e-253 877.1 647 66.6
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.3e-251 873.2 590 71.0
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 1.3e-251 873.2 542 76.4
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 5.6e-250 867.8 720 61.5
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 7.5e-247 857.4 631 65.6
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 2.4e-245 852.4 583 70.8
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 9.2e-245 850.5 622 66.6
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 3.5e-244 848.6 626 66.3
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 3.1e-240 835.5 867 52.0
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.3e-238 830.1 719 60.1
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 7.8e-236 820.8 562 69.8
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 7.1e-229 797.7 977 48.5
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 4.0e-208 728.8 722 54.7
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.4e-189 667.2 453 71.1
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 1.5e-175 620.5 747 45.4
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 1.0e-171 607.8 477 62.1
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 5.9e-159 565.5 363 75.2
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 1.3e-158 564.3 700 42.9
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 4.4e-154 549.3 627 46.6
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 5.4e-136 489.2 446 56.3
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 7.6e-122 442.2 373 58.2
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 1.9e-104 384.4 286 64.0
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 7.4e-93 345.9 226 74.3
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 1.8e-91 341.3 254 64.6
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 2.5e-80 304.3 291 55.3
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 3.1e-75 287.3 266 54.9
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 5.7e-69 266.5 167 80.8
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 6.1e-63 246.5 266 50.8
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 4.8e-60 236.9 149 69.8
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.7e-41 175.3 247 39.7
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 3.2e-40 171.0 154 57.8
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.8e-38 165.2 247 38.1
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 9.8e-37 159.5 225 40.0
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.5e-29 135.6 114 57.0
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.3e-28 132.5 107 64.5
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-28 132.1 169 43.2
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.7e-26 124.8 154 41.6
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-25 122.5 85 69.4
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.7e-25 122.1 98 58.2
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 2.3e-25 121.7 85 69.4
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.5e-24 119.0 129 50.4
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 3.3e-24 117.9 84 67.9
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 4.7e-23 114.0 109 54.1
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.8e-22 112.1 101 58.4
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 7.5e-21 106.7 72 73.6
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 9.8e-21 106.3 86 55.8
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 4.9e-20 104.0 109 51.4
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.4e-19 102.4 109 50.5
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 2.4e-19 101.7 75 69.3
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 1.2e-18 99.4 617 23.3
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 1.3e-17 95.9 61 65.6
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 1.3e-17 95.9 70 61.4
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 2.3e-17 95.1 79 60.8
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 3.0e-17 94.7 82 54.9
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.4e-14 85.9 99 47.5
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-14 84.3 239 30.1
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 1.2e-13 82.8 57 66.7
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 1.2e-13 82.8 57 64.9
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 1.5e-13 82.4 57 68.4
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 1.5e-13 82.4 57 68.4
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 2.0e-13 82.0 55 67.3
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 7.5e-13 80.1 129 37.2
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 9.8e-13 79.7 63 55.6
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 2.9e-12 78.2 57 64.9
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.7e-12 77.8 70 54.3
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 2.4e-11 75.1 172 28.5
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 1.0e-09 69.7 45 75.6
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 1.7e-09 68.9 71 52.1
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 2.8e-07 61.6 72 51.4
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 1.4e-06 59.3 335 18.5
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 8.9e-06 56.6 33 75.8


User provided reference genes

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