Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 0.0e+00 2133.6 1083 100.0
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 0.0e+00 2063.1 1084 97.0
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 6.8e-215 751.9 1170 42.6
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 9.5e-209 731.5 1182 41.7
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 2.4e-175 620.5 1178 39.0
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 7.1e-172 609.0 1178 37.2
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 8.7e-170 602.1 1180 37.8
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.3e-149 535.0 1179 36.0
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 6.9e-143 512.7 1128 34.9
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 2.0e-142 511.1 1142 34.1
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 4.5e-142 510.0 1124 35.4
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 3.2e-140 503.8 1110 34.8
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.5e-137 495.0 1125 34.3
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 3.3e-137 493.8 1114 33.7
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.4e-135 488.4 1112 34.5
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 2.6e-134 484.2 1139 33.2
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.7e-133 481.5 1130 33.6
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 3.8e-133 480.3 1127 33.3
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.6e-131 474.9 1139 32.7
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 2.3e-130 471.1 1130 33.3
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 3.3e-129 467.2 1121 33.4
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.7e-125 454.9 1116 32.7
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 5.0e-125 453.4 1138 33.2
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.5e-124 451.8 1143 32.7
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 2.1e-123 448.0 1127 32.6
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 4.7e-123 446.8 1109 31.9
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 2.2e-120 438.0 1112 33.3
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 2.2e-120 438.0 1118 32.2
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.4e-119 435.3 1144 31.9
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 3.5e-118 430.6 1097 32.4
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.4e-114 418.7 1125 31.5
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 8.9e-114 416.0 1122 31.2
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 9.8e-113 412.5 1098 31.7
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 3.7e-112 410.6 1093 32.7
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 5.9e-110 403.3 1144 30.6
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 1.0e-109 402.5 1099 31.2
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.3e-109 402.1 1106 32.5
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.3e-109 401.4 1143 31.3
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.5e-108 398.7 1120 31.2
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 4.7e-107 393.7 1145 31.2
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.8e-106 389.8 1132 30.8
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 6.8e-106 389.8 1154 31.2
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 2.0e-105 388.3 1119 29.4
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 2.6e-105 387.9 1106 29.2
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 3.4e-105 387.5 1125 29.1
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 7.5e-105 386.3 1123 29.9
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.9e-104 384.4 1122 30.2
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 2.4e-103 381.3 1115 30.9
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.2e-102 379.0 894 32.4
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.7e-102 377.9 1118 28.7
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 1.3e-101 375.6 1128 30.9
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 3.0e-101 374.4 1098 31.0
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 7.3e-100 369.8 1105 29.5
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 9.5e-100 369.4 1095 30.1
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.6e-99 367.5 1170 30.3
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 5.8e-97 360.1 1109 30.0
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 1.3e-96 359.0 1121 29.9
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.9e-95 355.1 1064 28.8
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 4.1e-95 354.0 1096 30.1
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 6.0e-94 350.1 1135 29.6
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.5e-92 345.5 830 32.4
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 4.7e-91 340.5 1118 29.9
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 1.1e-87 329.3 558 39.8
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.9e-84 318.5 1119 27.8
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.1e-83 315.1 1136 28.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.1e-83 313.2 1113 28.4
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.1e-82 312.8 1108 27.7
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 2.0e-81 308.5 1108 27.7
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.6e-81 308.1 1107 27.6
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.6e-81 306.6 1118 27.6
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 2.9e-80 304.7 742 32.5
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 6.4e-80 303.5 1102 28.0
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 1.9e-79 302.0 1114 29.7
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.6e-78 298.9 1121 28.2
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 5.6e-76 290.4 1124 27.3
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 4.9e-72 277.3 1110 27.9
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 3.9e-69 267.7 872 28.2
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 6.6e-69 266.9 1140 25.7
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 5.6e-68 263.8 771 31.0
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 5.6e-68 263.8 747 30.4
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 5.6e-68 263.8 1122 26.6
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 9.6e-68 263.1 1092 26.8
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 4.5e-65 254.2 699 32.2
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 1.7e-64 252.3 760 30.4
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 4.2e-63 247.7 1096 26.4
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 4.6e-62 244.2 879 27.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.0e-61 241.5 1090 27.7
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 5.1e-61 240.7 878 27.3
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.5e-60 238.4 807 28.3
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.6e-59 235.7 711 29.8
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 6.2e-59 233.8 757 29.2
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 6.2e-59 233.8 757 29.2
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 5.3e-58 230.7 757 29.1
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.0e-48 199.9 333 37.2
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.9e-47 195.7 349 35.2
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.6e-46 192.6 251 43.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 9.7e-44 183.3 598 28.8
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.6e-43 182.6 657 26.5
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 5.9e-41 174.1 535 30.5
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 6.5e-40 170.6 160 51.2
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 1.1e-39 169.9 672 27.4
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 3.3e-36 158.3 307 30.6
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 3.1e-34 151.8 1050 25.1
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 2.9e-32 145.2 525 28.8
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 2.9e-32 145.2 744 25.0
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.1e-31 143.3 154 46.8
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.7e-30 138.7 173 42.8
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.9e-30 137.1 526 27.2
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.3e-29 135.6 204 37.7
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.0e-29 135.2 460 31.5
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 1.1e-28 133.3 168 41.1
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.6e-28 132.1 463 29.8
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 4.4e-28 131.3 168 41.7
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 7.4e-28 130.6 802 25.7
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 7.4e-28 130.6 355 31.3
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.8e-26 125.9 512 24.8
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.4e-26 125.6 173 37.0
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 2.4e-26 125.6 311 28.6
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 5.3e-26 124.4 166 39.2
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 9.1e-26 123.6 324 27.5
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 5.9e-25 120.9 709 25.5
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 7.7e-25 120.6 225 32.9
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 2.9e-24 118.6 709 26.0
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.9e-24 118.6 335 26.9
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 9.4e-23 113.6 1099 23.3
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.4e-21 109.8 129 43.4
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 1.8e-21 109.4 662 26.4
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 2.3e-21 109.0 641 25.9
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 3.9e-21 108.2 113 45.1
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 3.7e-19 101.7 1046 23.0
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 2.4e-18 99.0 249 29.7
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 4.5e-17 94.7 137 35.0
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 3.6e-14 85.1 803 23.4
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.5e-12 79.7 525 25.0
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 5.7e-12 77.8 448 24.6
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 7.5e-12 77.4 58 58.6
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.1e-10 73.6 768 21.7
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 9.1e-10 70.5 63 47.6
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 1.3e-08 66.6 89 47.2
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 3.8e-08 65.1 101 39.6
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 3.2e-07 62.0 91 44.0


User provided reference genes

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