Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 2.1e-95 352.4 188 100.0
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 1.5e-93 346.3 188 98.4
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 6.1e-71 271.2 188 77.7
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 3.0e-70 268.9 188 78.2
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 1.3e-68 263.5 190 77.4
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 3.7e-68 261.9 188 74.5
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 4.8e-68 261.5 193 73.6
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 6.3e-68 261.2 188 75.5
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.1e-67 260.4 190 76.8
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 1.8e-67 259.6 190 74.7
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.8e-67 259.6 190 74.7
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.8e-67 259.6 190 74.7
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.1e-67 258.8 190 75.3
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 9.1e-67 257.3 189 75.1
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.2e-66 256.9 187 74.9
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 2.0e-66 256.1 189 73.5
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 5.9e-66 254.6 189 75.7
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.0e-65 253.8 189 74.1
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.3e-65 253.4 188 73.4
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.3e-65 253.4 193 74.6
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.3e-65 253.4 193 74.6
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 1.7e-65 253.1 190 73.2
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 2.9e-65 252.3 189 73.0
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 8.6e-65 250.8 191 74.3
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.5e-64 250.0 189 73.0
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 1.9e-64 249.6 189 72.5
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 1.9e-64 249.6 227 64.3
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.2e-64 248.4 190 73.7
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 4.2e-64 248.4 189 71.4
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 5.5e-64 248.1 193 72.0
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 5.5e-64 248.1 189 73.5
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 7.2e-64 247.7 189 73.5
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.2e-63 246.9 189 72.5
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 2.8e-63 245.7 189 71.4
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 3.6e-63 245.4 187 73.8
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 8.0e-63 244.2 189 70.9
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 8.0e-63 244.2 190 72.1
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.8e-62 243.0 189 70.4
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 2.3e-62 242.7 190 73.2
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 3.0e-62 242.3 188 71.3
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 3.0e-62 242.3 190 70.0
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 4.0e-62 241.9 190 70.0
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 6.8e-62 241.1 190 68.4
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 6.8e-62 241.1 191 71.2
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 8.8e-62 240.7 192 71.9
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 8.8e-62 240.7 192 71.9
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 8.8e-62 240.7 191 71.2
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 8.8e-62 240.7 191 69.1
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 8.8e-62 240.7 194 72.2
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.2e-61 240.4 187 70.1
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.2e-61 240.4 186 73.1
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 1.5e-61 240.0 187 72.2
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.5e-61 240.0 191 69.1
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.5e-61 240.0 189 70.9
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.5e-61 240.0 190 69.5
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.5e-61 240.0 188 71.3
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 2.6e-61 239.2 191 70.7
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 2.6e-61 239.2 191 70.7
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 2.6e-61 239.2 191 70.7
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 3.4e-61 238.8 189 73.0
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 7.5e-61 237.7 188 72.3
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.3e-60 236.9 202 66.3
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.3e-60 236.9 187 71.7
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.7e-60 236.5 191 71.2
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.7e-60 236.5 193 66.8
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 2.2e-60 236.1 187 71.1
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 2.8e-60 235.7 191 70.7
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 2.8e-60 235.7 191 70.7
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 2.8e-60 235.7 178 72.5
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 4.9e-60 235.0 191 70.7
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 4.9e-60 235.0 191 70.7
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 6.3e-60 234.6 188 72.3
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 8.3e-60 234.2 190 69.5
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 8.3e-60 234.2 187 70.6
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 1.1e-59 233.8 193 69.4
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.4e-59 233.4 187 70.6
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.4e-59 233.4 192 70.8
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.8e-59 233.0 193 68.4
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.8e-59 233.0 189 70.9
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 2.4e-59 232.6 173 74.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 3.1e-59 232.3 191 70.2
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 4.1e-59 231.9 190 66.3
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 5.4e-59 231.5 187 70.6
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 7.0e-59 231.1 185 70.8
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 7.0e-59 231.1 205 64.4
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 9.2e-59 230.7 187 66.8
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 9.2e-59 230.7 187 67.9
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 9.2e-59 230.7 190 65.3
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 1.2e-58 230.3 191 68.6
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.7e-58 229.2 187 70.6
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 5.9e-58 228.0 188 71.3
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 7.8e-58 227.6 188 68.1
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.3e-57 226.9 185 68.6
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.7e-57 226.5 187 69.0
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 2.3e-57 226.1 216 61.1
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 2.3e-57 226.1 188 69.1
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 2.9e-57 225.7 160 76.9
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 6.6e-57 224.6 188 63.3
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 8.6e-57 224.2 188 69.1
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 4.3e-56 221.9 189 67.7
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 2.8e-55 219.2 185 67.6
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 4.7e-55 218.4 170 70.6
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 4.7e-55 218.4 188 68.1
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 8.0e-55 217.6 188 66.5
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.0e-54 217.2 183 65.6
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.0e-54 217.2 217 58.5
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.3e-54 216.1 126 85.7
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 8.9e-54 214.2 158 74.1
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 8.9e-54 214.2 158 74.1
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 8.9e-54 214.2 184 67.4
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.2e-53 213.8 188 68.6
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 2.0e-53 213.0 127 85.0
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 2.6e-53 212.6 173 69.9
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 3.4e-53 212.2 168 71.4
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 4.4e-53 211.8 125 86.4
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 4.4e-53 211.8 131 81.7
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 4.4e-53 211.8 182 68.1
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 6.4e-52 208.0 183 66.1
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 8.3e-52 207.6 203 60.6
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 3.2e-51 205.7 126 82.5
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.6e-50 203.4 187 64.2
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.6e-50 201.8 159 70.4
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 6.6e-49 198.0 195 58.5
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.9e-48 196.4 195 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 3.3e-48 195.7 128 79.7
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 3.3e-48 195.7 190 63.2
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.2e-47 193.7 189 59.3
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.6e-47 193.4 197 60.4
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 3.6e-47 192.2 147 74.1
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.1e-46 190.7 187 57.2
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.4e-46 190.3 135 71.1
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 5.2e-46 188.3 149 71.8
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.2e-45 187.2 186 57.5
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-45 186.8 149 70.5
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 2.0e-45 186.4 149 70.5
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 3.4e-45 185.7 196 57.1
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 7.5e-45 184.5 189 60.8
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 9.8e-45 184.1 175 57.7
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.3e-44 183.7 153 68.6
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 2.3e-41 172.9 198 55.1
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.9e-40 169.9 156 63.5
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 3.3e-40 169.1 156 62.8
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 8.1e-39 164.5 150 58.7
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 2.3e-38 162.9 140 67.1
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.3e-36 157.1 159 58.5
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.4e-35 152.9 194 50.0
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 4.1e-35 152.1 124 62.1
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 5.4e-35 151.8 127 59.8
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.0e-33 147.5 195 48.7
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.0e-33 146.0 177 50.8
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 3.9e-33 145.6 137 59.9
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 3.9e-33 145.6 194 50.5
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.5e-32 143.7 189 48.1
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 1.9e-32 143.3 123 61.8
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 8.1e-31 137.9 95 75.8
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.6e-29 132.9 175 46.9
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 6.4e-28 128.3 78 82.1
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.4e-27 127.1 151 56.3
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.4e-27 127.1 114 65.8
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.4e-27 126.3 139 56.1
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.6e-26 122.1 69 87.0
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 7.8e-26 121.3 123 61.0
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 7.3e-24 114.8 68 83.8
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.8e-23 112.8 68 82.4
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 1.7e-17 93.6 69 66.7
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.3e-15 87.4 57 77.2
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.3e-15 87.4 47 85.1
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.6e-15 87.0 54 79.6
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 2.8e-15 86.3 125 49.6
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 4.8e-15 85.5 125 49.6
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 4.0e-14 82.4 125 38.4
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 9.0e-14 81.3 52 73.1
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 7.6e-13 78.2 85 52.9
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 2.5e-08 63.2 137 40.9
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 3.7e-07 59.3 38 73.7
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 4.8e-07 58.9 31 90.3
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 2.4e-06 56.6 58 56.9
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 4.0e-06 55.8 58 56.9
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 5.3e-06 55.5 62 43.5


User provided reference genes

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