Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 6.4e-160 567.4 292 100.0
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 6.6e-157 557.4 292 98.3
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 4.2e-135 485.0 292 84.9
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 4.2e-135 485.0 292 86.0
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.6e-134 483.0 291 83.8
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.3e-133 479.9 291 84.5
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 2.3e-133 479.2 292 84.2
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 6.7e-133 477.6 291 83.2
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.5e-132 476.5 291 84.2
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 3.3e-132 475.3 291 82.1
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.3e-131 473.4 291 81.8
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.6e-131 473.0 291 82.5
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.7e-131 471.9 292 83.2
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.8e-131 471.5 293 84.0
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.4e-130 469.9 291 83.5
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.8e-130 469.5 291 82.5
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 2.4e-130 469.2 291 81.8
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.4e-130 469.2 291 83.2
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 3.1e-130 468.8 291 82.5
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 6.9e-130 467.6 291 80.8
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 9.0e-130 467.2 291 82.5
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.5e-129 466.5 291 82.5
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 4.5e-129 464.9 292 79.1
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.0e-128 463.8 292 78.8
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.7e-128 463.0 282 83.0
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.7e-128 463.0 292 78.8
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.9e-128 462.2 293 80.5
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 2.9e-128 462.2 291 81.1
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 6.5e-128 461.1 291 82.1
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.9e-127 459.5 291 80.8
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 2.5e-127 459.1 292 78.8
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 3.2e-127 458.8 291 80.1
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 5.5e-127 458.0 292 81.8
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 5.5e-127 458.0 291 81.1
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 7.2e-127 457.6 293 79.9
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 7.2e-127 457.6 291 80.1
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 7.2e-127 457.6 293 80.5
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.6e-126 456.4 291 78.7
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.1e-126 456.1 322 75.2
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 4.6e-126 454.9 292 80.1
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 7.9e-126 454.1 291 79.0
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 3.0e-125 452.2 291 78.4
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 8.7e-125 450.7 291 78.4
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.9e-124 449.5 291 79.0
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.9e-124 449.5 291 78.0
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 1.3e-123 446.8 291 79.0
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 2.2e-123 446.0 291 78.7
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 2.2e-123 446.0 293 78.2
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.8e-123 445.7 292 77.1
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 1.4e-122 443.4 272 83.8
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 6.9e-122 441.0 291 77.7
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.5e-121 439.9 305 74.8
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.6e-121 439.1 291 78.7
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.6e-121 439.1 325 70.8
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 3.4e-121 438.7 292 77.7
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 5.9e-121 438.0 296 75.7
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 7.7e-121 437.6 291 77.7
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.7e-120 436.4 291 77.3
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 3.8e-120 435.3 291 75.6
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.1e-119 433.7 291 76.3
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.4e-119 433.3 291 74.9
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.9e-119 433.0 291 76.3
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.5e-119 432.6 291 76.6
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 3.2e-119 432.2 320 71.9
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.6e-118 429.9 291 76.6
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 2.1e-118 429.5 292 74.0
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.7e-118 429.1 291 74.2
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 6.1e-118 427.9 290 76.2
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 3.0e-117 425.6 296 76.4
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.9e-117 425.2 292 73.6
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 3.9e-117 425.2 291 74.6
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.5e-116 423.3 291 74.9
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.5e-116 423.3 292 76.4
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.0e-116 422.9 292 72.9
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 2.6e-116 422.5 292 77.1
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 2.6e-116 422.5 292 77.1
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-115 420.2 292 73.3
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 4.8e-115 418.3 295 71.5
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.1e-114 417.2 269 77.0
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.4e-114 416.8 310 69.7
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 1.8e-114 416.4 291 76.6
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 2.4e-114 416.0 293 73.7
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.1e-114 415.2 312 68.9
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.5e-113 413.3 292 74.7
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.3e-112 410.2 387 61.8
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 2.2e-112 409.5 292 74.3
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 2.9e-112 409.1 291 72.5
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 3.8e-112 408.7 297 71.0
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 3.8e-112 408.7 293 73.0
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 8.5e-112 407.5 283 73.9
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.1e-111 407.1 292 74.0
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.1e-111 407.1 324 68.2
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.9e-111 406.4 291 73.9
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 2.5e-111 406.0 236 86.9
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 3.2e-111 405.6 291 72.2
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 3.2e-111 405.6 291 72.2
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 2.7e-110 402.5 291 72.2
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 2.7e-110 402.5 291 71.8
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 3.6e-110 402.1 293 73.7
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.4e-109 400.2 291 72.5
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 2.3e-109 399.4 292 71.6
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 5.2e-109 398.3 291 69.4
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 6.7e-109 397.9 291 70.8
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 2.8e-107 392.5 291 72.5
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 3.7e-107 392.1 291 72.5
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.1e-106 390.6 292 71.2
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.8e-106 389.8 297 68.7
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 5.3e-106 388.3 291 70.4
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 4.2e-103 378.6 291 69.4
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 4.2e-103 378.6 297 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.3e-101 372.9 291 67.0
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 2.3e-101 372.9 227 81.1
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 6.3e-99 364.8 291 64.3
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 2.0e-97 359.8 299 64.5
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 3.0e-93 345.9 261 71.6
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 3.0e-93 345.9 292 62.7
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 6.8e-93 344.7 294 64.3
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 6.8e-93 344.7 243 72.8
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 5.7e-92 341.7 226 74.3
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 5.7e-92 341.7 240 73.8
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.3e-91 340.5 291 63.2
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 2.7e-89 332.8 209 80.9
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 5.9e-89 331.6 291 64.3
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.9e-89 331.6 298 61.1
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.3e-88 330.5 189 85.2
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 4.4e-84 315.5 286 60.1
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 3.5e-81 305.8 286 57.3
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 1.3e-75 287.3 299 53.2
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 2.9e-75 286.2 296 53.0
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.8e-74 283.5 188 71.8
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 7.0e-74 281.6 186 73.1
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 2.8e-70 269.6 208 66.3
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 1.4e-66 257.3 295 49.2
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.6e-62 242.7 292 50.7
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 4.6e-57 225.7 294 50.0
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 4.6e-57 225.7 294 50.0
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 4.6e-57 225.7 294 50.0
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.4e-53 214.2 264 50.8
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.8e-44 182.2 103 88.3
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.2e-43 180.3 106 84.0
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 3.9e-40 169.5 86 98.8
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.9e-39 167.2 153 60.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.6e-39 165.6 153 59.5
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.6e-39 165.6 153 59.5
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 9.6e-39 164.9 152 59.9
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 8.1e-38 161.8 229 44.1
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 1.3e-32 144.4 188 42.0
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 6.2e-30 135.6 110 67.3
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 2.0e-28 130.6 80 81.2
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 2.0e-28 130.6 80 81.2
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.3e-27 127.9 72 86.1
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.7e-27 127.5 108 63.9
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 3.7e-22 109.8 60 81.7
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.8e-21 107.5 79 69.6
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 2.6e-20 103.6 93 62.4
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.0e-19 101.7 86 64.0
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 8.4e-19 98.6 189 39.7
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 1.9e-18 97.4 128 44.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 9.0e-13 78.6 254 29.1
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 7.6e-12 75.5 57 64.9
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 5.5e-10 69.3 56 66.1
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 4.8e-06 56.2 37 67.6


User provided reference genes

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