Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 2523.0 1354 100.0
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 2471.8 1354 97.6
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1730.7 1369 68.2
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1711.4 1368 68.4
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1709.5 1365 68.3
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1609.7 1372 63.3
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1602.8 1370 65.0
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1589.7 1364 64.7
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1585.5 1368 64.6
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1553.5 1367 62.5
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1547.7 1368 63.2
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1544.3 1366 62.2
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1542.7 1365 62.3
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1540.0 1377 61.6
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1535.0 1364 61.2
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1520.8 1375 62.3
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1518.8 1359 62.3
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1513.0 1360 61.7
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1510.0 1363 60.5
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1505.3 1363 60.4
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1475.7 1400 59.5
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1468.8 1364 60.4
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1467.2 1377 59.8
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1461.0 1364 59.2
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1459.9 1366 60.8
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1459.1 1364 59.0
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1458.4 1392 59.8
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1455.3 1380 59.5
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1448.3 1358 60.8
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1445.6 1358 60.6
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1444.9 1358 60.5
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1444.1 1362 58.7
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1443.7 1365 58.4
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1443.3 1363 58.5
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1443.3 1378 58.4
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1439.1 1368 59.4
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1435.6 1363 59.6
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1434.1 1359 58.0
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1430.6 1357 58.1
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1428.3 1365 58.5
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1420.2 1357 57.3
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1420.2 1363 58.5
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1416.0 1380 57.7
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1411.7 1357 57.0
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1398.3 1366 57.4
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1397.1 1356 58.1
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1395.2 1363 58.3
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1393.6 1345 58.3
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1388.6 1368 58.8
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1383.2 1368 56.9
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1382.9 1362 56.7
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1373.2 1408 56.5
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1365.9 1363 57.0
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1361.7 1360 57.3
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1361.3 1345 56.6
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1360.9 1184 62.3
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1352.8 1329 56.6
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1350.1 1328 56.2
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1347.4 1331 56.9
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1347.0 1329 56.6
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1345.1 1290 61.3
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1343.9 1332 56.6
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1342.8 1335 56.2
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1337.4 1327 56.4
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1336.6 1363 57.1
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1334.7 1357 54.9
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1334.3 1322 56.4
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1332.0 1364 57.3
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1331.6 1326 56.3
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1328.5 1395 54.9
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1326.6 1339 56.1
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1326.6 1329 56.0
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1325.8 1333 56.6
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1325.8 1277 56.6
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1324.3 1361 57.3
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1322.8 1400 55.7
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1322.4 1381 55.9
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1300.4 1338 55.1
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1294.6 1353 54.8
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1288.1 1367 53.5
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1286.9 1191 59.8
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1284.2 1190 59.7
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1280.4 1351 54.5
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1267.7 1215 57.3
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1261.1 1278 56.7
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1237.6 1329 54.3
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1228.4 1370 53.9
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1198.7 1423 52.0
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1196.4 1075 62.0
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 0.0e+00 1189.9 1350 51.0
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1176.8 1055 59.9
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1175.6 1375 49.2
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1168.3 1066 59.3
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1143.3 1072 58.8
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 0.0e+00 1134.4 1200 55.1
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1131.7 1387 50.4
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1122.1 1363 49.4
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1110.1 1061 58.4
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 0.0e+00 1092.0 1307 52.0
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 0.0e+00 1082.4 1339 51.7
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 5.7e-304 1048.1 1365 47.1
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 5.0e-300 1035.0 981 58.6
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 3.0e-284 982.6 955 56.0
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 5.6e-259 898.7 1377 42.6
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 4.8e-258 895.6 956 52.5
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.5e-256 890.6 1023 48.9
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.0e-245 852.0 773 59.6
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.9e-243 847.0 1175 45.5
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 2.8e-242 843.2 1127 46.0
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 1.2e-229 801.2 764 57.6
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 5.1e-228 795.8 1412 38.2
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 3.1e-225 786.6 867 53.4
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.3e-223 781.2 692 59.8
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 6.1e-221 772.3 1059 47.1
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.5e-207 725.7 841 50.1
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.0e-188 665.2 1099 41.4
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.8e-172 609.4 504 65.3
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.5e-158 564.3 461 66.2
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 8.1e-157 559.3 617 50.9
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 1.9e-153 548.1 1535 29.6
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 3.4e-139 500.7 410 68.5
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 7.6e-131 473.0 416 63.9
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 4.2e-113 414.1 302 72.8
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 2.2e-98 365.2 347 61.4
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 7.0e-92 343.6 1447 27.2
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.8e-87 328.9 324 55.2
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 8.3e-77 293.5 356 50.6
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 4.1e-76 291.2 447 43.6
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 6.8e-71 273.9 279 58.4
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 2.3e-63 248.8 353 42.5
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 2.3e-50 205.7 607 32.6
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 1.4e-44 186.4 254 49.6
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 2.8e-40 172.2 156 57.1
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 7.8e-35 154.1 232 41.4
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 1.0e-34 153.7 113 67.3
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 3.9e-34 151.8 106 72.6
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 5.8e-30 137.9 82 80.5
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 4.6e-27 128.3 111 66.7
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.0e-26 125.6 195 42.6
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 2.9e-21 109.0 113 52.2
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 4.9e-21 108.2 84 59.5
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.9e-13 81.6 81 55.6
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.9e-13 81.6 81 55.6
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 9.3e-12 77.4 92 50.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.2e-11 77.0 70 58.6
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 3.9e-10 72.0 58 63.8
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 9.7e-09 67.4 50 64.0
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 9.0e-07 60.8 163 27.0
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 4.5e-06 58.5 161 26.7


User provided reference genes

Program Settings