Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 1.0e-99 366.7 183 100.0
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 4.0e-99 364.8 183 99.5
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.5e-93 346.3 183 93.4
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 82.5
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 82.5
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 81.4
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 81.4
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.3e-81 306.6 183 81.4
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.8e-80 302.8 182 82.4
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 1.6e-79 299.7 183 80.3
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 78.7
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 79.2
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 4.5e-79 298.1 183 79.8
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 79.8
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 77.0
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 77.0
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 79.2
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.3e-78 296.6 183 78.1
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 78.7
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 78.1
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 2.3e-78 295.8 183 78.1
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 2.9e-78 295.4 181 78.5
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 5.0e-78 294.7 183 78.1
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 5.0e-78 294.7 181 79.0
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 6.6e-78 294.3 183 79.2
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 6.6e-78 294.3 183 76.5
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 8.6e-78 293.9 183 78.1
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 1.1e-77 293.5 183 79.2
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.1e-77 293.5 183 78.1
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.1e-77 293.5 183 78.1
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.5e-77 293.1 183 77.6
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 1.9e-77 292.7 183 78.1
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 2.5e-77 292.4 181 76.2
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 2.5e-77 292.4 183 78.7
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 2.5e-77 292.4 183 77.6
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 3.3e-77 292.0 183 78.7
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 3.3e-77 292.0 183 79.2
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.3e-77 292.0 183 78.1
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 75.1
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 4.3e-77 291.6 183 76.5
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 5.6e-77 291.2 183 79.2
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 5.6e-77 291.2 183 79.2
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 7.3e-77 290.8 183 77.0
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 7.3e-77 290.8 183 77.0
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 75.1
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 9.5e-77 290.4 183 76.5
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 9.5e-77 290.4 183 76.5
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 1.2e-76 290.0 183 77.0
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 74.6
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.6e-76 289.7 183 78.7
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.6e-76 289.7 183 76.5
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.1e-76 289.3 183 78.1
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.1e-76 289.3 183 76.0
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 2.1e-76 289.3 183 77.0
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 3.6e-76 288.5 182 77.5
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 4.7e-76 288.1 181 75.7
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 8.0e-76 287.3 183 76.0
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 8.0e-76 287.3 183 76.0
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.0e-75 287.0 190 75.3
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 1.0e-75 287.0 179 75.4
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 3.0e-75 285.4 183 72.1
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 4.0e-75 285.0 183 80.9
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 6.8e-75 284.3 182 75.3
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 6.8e-75 284.3 183 73.8
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 8.9e-75 283.9 183 76.0
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.2e-74 283.5 179 74.9
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 1.5e-74 283.1 181 73.5
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.5e-74 283.1 182 74.7
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.5e-74 283.1 183 73.8
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.5e-74 283.1 183 73.8
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.0e-74 282.7 179 74.3
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 2.6e-74 282.3 183 74.9
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 2.6e-74 282.3 183 76.0
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 2.6e-74 282.3 183 71.6
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 2.6e-74 282.3 183 74.9
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 3.4e-74 282.0 179 74.9
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 3.4e-74 282.0 183 73.8
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.4e-74 282.0 183 73.8
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.4e-74 282.0 183 73.8
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.4e-74 282.0 183 73.8
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 4.4e-74 281.6 181 72.9
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 4.4e-74 281.6 179 75.4
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 5.8e-74 281.2 183 73.2
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 5.8e-74 281.2 183 73.2
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 5.8e-74 281.2 183 74.9
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 5.8e-74 281.2 181 74.0
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 5.8e-74 281.2 181 74.0
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 5.8e-74 281.2 181 74.0
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 5.8e-74 281.2 181 74.0
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 5.8e-74 281.2 181 74.0
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 7.5e-74 280.8 179 75.4
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 7.5e-74 280.8 183 71.6
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.3e-73 280.0 183 75.4
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.3e-73 280.0 183 73.2
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.3e-73 280.0 183 73.8
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.7e-73 279.6 183 73.2
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 3.7e-73 278.5 183 74.3
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 3.7e-73 278.5 181 74.6
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 6.4e-73 277.7 183 71.0
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 8.3e-73 277.3 182 73.1
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 1.4e-72 276.6 183 72.1
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.8e-72 276.2 183 70.5
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.8e-72 276.2 183 74.3
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 2.4e-72 275.8 179 73.2
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 9.2e-72 273.9 183 73.8
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 6.0e-71 271.2 183 71.0
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.0e-70 270.4 184 72.3
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 8.6e-70 267.3 183 71.6
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.1e-69 266.9 184 68.5
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.5e-69 265.8 184 67.9
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 3.3e-69 265.4 182 73.1
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.2e-68 263.5 184 69.0
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 1.6e-68 263.1 182 71.4
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 4.7e-68 261.5 228 61.0
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 6.2e-68 261.2 152 80.9
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 1.2e-66 256.9 184 65.8
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.5e-66 256.5 183 67.2
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 7.5e-66 254.2 183 66.7
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.7e-65 253.1 185 68.1
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 6.4e-65 251.1 219 61.6
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 3.5e-63 245.4 155 72.3
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 4.6e-63 245.0 161 74.5
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 6.0e-63 244.6 183 68.3
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 6.6e-62 241.1 184 61.4
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 8.6e-62 240.7 181 65.7
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.1e-61 240.4 152 75.7
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 5.6e-61 238.0 183 67.8
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 2.3e-59 232.6 136 78.7
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 5.8e-58 228.0 181 63.5
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 5.4e-56 221.5 188 63.8
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 7.8e-55 217.6 138 74.6
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 2.3e-54 216.1 181 63.0
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 4.3e-53 211.8 150 70.7
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.7e-49 199.9 172 60.5
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.1e-48 197.2 152 64.5
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 2.4e-48 196.1 158 59.5
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.5e-47 192.2 179 58.7
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.9e-45 186.4 186 50.5
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 2.5e-45 186.0 183 55.2
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.3e-45 185.7 149 61.7
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.8e-44 182.6 102 85.3
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.5e-42 176.8 100 86.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.3e-41 173.7 99 82.8
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.7e-41 173.3 100 83.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 2.2e-41 172.9 158 55.1
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.1e-40 170.6 146 59.6
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.1e-40 170.6 102 78.4
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 1.6e-39 166.8 106 72.6
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.8e-35 153.3 134 59.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 7.1e-32 141.4 105 65.7
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.2e-31 140.6 99 64.6
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.2e-26 124.0 78 78.2
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 4.5e-26 122.1 101 63.4
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 1.4e-24 117.1 81 70.4
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.9e-21 106.7 81 63.0
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 1.8e-19 100.1 106 50.9
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 9.0e-19 97.8 73 60.3
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.2e-17 93.2 52 86.5
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.6e-15 87.0 106 49.1
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 8.2e-12 74.7 127 40.9
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 1.4e-08 63.9 37 75.7
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 3.0e-06 56.2 130 27.7
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 5.1e-06 55.5 130 29.2
Nitab4.5_0004485g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 144 26.4
VMungo1309G2077 Vigna mungo HOM05D001645 ORTHO05D001749 6.7e-06 55.1 161 26.7
Nitab4.5_0000703g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 8.8e-06 54.7 130 27.7
Nitab4.5_0000703g0020 Nicotiana tabacum HOM05D001645 ORTHO05D001749 8.8e-06 54.7 130 27.7
Nitab4.5_0013997g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 8.8e-06 54.7 130 27.7


User provided reference genes

Program Settings