Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 9.0e-165 583.6 303 100.0
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 2.9e-163 578.6 303 99.0
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.0e-128 463.8 303 78.5
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 3.0e-128 462.2 303 77.9
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 4.8e-126 454.9 303 77.2
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 4.8e-126 454.9 303 76.9
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 6.9e-125 451.1 300 77.3
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 1.2e-121 440.3 301 74.8
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 3.6e-121 438.7 306 74.8
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 1.0e-120 437.2 298 75.2
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 1.4e-120 436.8 301 73.8
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 8.8e-120 434.1 296 75.3
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 2.0e-119 433.0 300 75.3
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 4.8e-118 428.3 301 72.4
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 6.3e-118 427.9 300 74.7
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 2.4e-117 426.0 300 74.3
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 4.1e-117 425.2 301 72.4
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.2e-116 423.7 303 73.6
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 5.9e-116 421.4 298 73.2
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.0e-115 420.6 297 75.8
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 2.9e-115 419.1 300 72.0
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 6.5e-115 417.9 302 72.8
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 1.1e-114 417.2 300 71.0
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 2.5e-114 416.0 303 71.6
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 3.2e-114 415.6 302 71.5
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 2.1e-113 412.9 351 63.8
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 3.6e-113 412.1 322 68.6
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 4.7e-113 411.8 302 71.5
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 4.7e-113 411.8 302 72.8
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 1.4e-112 410.2 305 70.5
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.4e-112 410.2 302 71.9
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 1.4e-112 410.2 302 71.2
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 1.4e-112 410.2 300 70.0
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 2.3e-112 409.5 303 72.3
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 2.3e-112 409.5 304 71.4
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 4.0e-112 408.7 299 73.6
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 4.0e-112 408.7 303 69.3
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.5e-111 406.8 300 68.7
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 2.6e-111 406.0 300 68.7
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 7.5e-111 404.4 303 70.6
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.7e-110 403.3 300 72.3
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 3.7e-110 402.1 322 65.8
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 4.8e-110 401.7 322 65.8
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 6.3e-110 401.4 303 71.6
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 1.4e-109 400.2 304 71.4
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 2.4e-109 399.4 303 69.3
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 5.3e-109 398.3 302 71.2
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 5.3e-109 398.3 300 72.7
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 7.0e-109 397.9 303 70.3
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 7.0e-109 397.9 304 69.4
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 1.6e-108 396.7 280 71.8
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 2.0e-108 396.4 334 65.9
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.7e-108 396.0 303 68.3
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 2.7e-108 396.0 302 69.2
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 2.7e-108 396.0 302 70.5
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 3.5e-108 395.6 304 71.7
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 5.9e-108 394.8 301 71.4
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 7.7e-108 394.4 301 67.1
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 1.0e-107 394.0 303 68.3
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 3.8e-107 392.1 366 59.8
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 5.0e-107 391.7 302 70.5
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 5.0e-107 391.7 302 70.5
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 2.5e-106 389.4 299 69.6
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 3.2e-106 389.0 331 65.0
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 4.7e-105 385.2 300 69.0
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 8.0e-105 384.4 299 71.6
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 8.0e-105 384.4 301 68.1
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 1.0e-104 384.0 280 72.1
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 1.8e-104 383.3 302 70.9
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 1.8e-104 383.3 302 70.9
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 6.8e-104 381.3 302 70.5
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.7e-102 375.6 368 56.0
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 6.3e-102 374.8 262 72.5
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.1e-101 374.0 279 71.0
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 4.1e-101 372.1 328 65.5
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 9.1e-101 370.9 280 71.8
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 1.2e-100 370.5 256 73.8
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 2.0e-100 369.8 256 73.8
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 2.7e-100 369.4 302 67.9
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 7.7e-100 367.9 276 70.3
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 3.2e-98 362.5 328 62.8
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 1.2e-97 360.5 342 59.9
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 1.8e-96 356.7 256 71.5
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 8.8e-96 354.4 256 72.3
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 3.4e-95 352.4 303 65.0
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.1e-93 345.9 369 54.7
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 4.1e-93 345.5 293 66.9
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 2.0e-92 343.2 256 70.3
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 3.5e-92 342.4 315 62.9
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.1e-90 337.4 309 63.1
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 2.5e-90 336.3 258 68.6
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 5.6e-90 335.1 304 64.8
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 2.1e-89 333.2 261 69.0
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 1.8e-88 330.1 329 59.0
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.2e-87 327.4 284 63.7
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 2.6e-87 326.2 206 78.6
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 3.4e-87 325.9 303 59.7
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 1.7e-86 323.6 323 56.7
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 3.7e-86 322.4 209 76.1
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 2.4e-85 319.7 252 65.9
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 4.6e-84 315.5 235 69.8
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 4.6e-84 315.5 207 73.9
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 7.8e-84 314.7 249 69.5
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.0e-83 312.8 255 65.5
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 3.0e-83 312.8 247 70.9
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 3.3e-82 309.3 299 60.5
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.2e-81 307.4 325 53.5
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 4.7e-81 305.4 259 63.3
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 1.2e-79 300.8 295 56.3
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.6e-79 299.7 185 81.1
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.4e-79 299.3 303 54.8
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 4.1e-77 292.4 272 62.1
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 1.2e-76 290.8 245 64.9
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 1.4e-69 267.3 226 65.0
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.4e-69 267.3 290 54.5
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 7.1e-69 265.0 353 47.6
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 2.1e-68 263.5 200 66.0
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 6.6e-67 258.5 165 77.0
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.3e-66 256.1 249 55.0
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 9.5e-66 254.6 297 51.5
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 1.6e-60 237.3 154 77.9
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 5.1e-59 232.3 202 61.4
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 4.7e-57 225.7 157 72.0
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 2.0e-47 193.7 129 76.0
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 6.9e-32 142.1 144 56.9
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 8.4e-30 135.2 310 33.5
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 2.1e-28 130.6 331 33.5
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 1.6e-20 104.4 80 70.0
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 8.8e-19 98.6 329 29.8
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 5.9e-15 85.9 96 51.0
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 8.8e-11 72.0 57 61.4
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 3.3e-10 70.1 52 73.1
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 1.8e-08 64.3 52 61.5
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 5.3e-08 62.8 72 54.2
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 2.0e-07 60.8 181 34.8
CDE04G0373 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.7e-06 57.8 46 69.6


User provided reference genes

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