Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 0.0e+00 1203.7 670 100.0
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 0.0e+00 1129.8 630 97.0
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.4e-258 895.6 633 75.8
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.0e-258 894.8 633 75.8
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 3.9e-245 851.7 612 75.0
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 1.5e-244 849.7 689 69.8
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.4e-242 843.2 676 68.0
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.4e-242 842.4 682 68.9
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.0e-242 841.6 676 68.0
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.5e-241 839.7 674 70.0
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 1.9e-239 832.8 627 71.9
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 5.5e-239 831.2 673 69.8
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.1e-238 829.3 631 70.5
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 7.9e-238 827.4 628 72.5
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.9e-238 827.4 628 71.7
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 7.4e-236 820.8 624 70.7
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 1.4e-234 816.6 623 70.9
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 3.1e-234 815.5 630 70.0
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.2e-233 813.5 693 66.7
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 2.9e-232 808.9 671 68.9
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.1e-231 807.0 632 69.1
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.4e-231 806.6 676 65.8
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 7.1e-231 804.3 674 67.4
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 9.3e-231 803.9 632 68.8
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 1.2e-230 803.5 672 66.7
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 3.5e-230 802.0 678 65.6
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 3.5e-230 802.0 632 69.0
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 4.6e-230 801.6 657 67.1
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.0e-229 800.4 671 65.9
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.3e-229 799.3 671 66.6
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.1e-228 797.0 665 66.6
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 4.3e-228 795.0 635 68.5
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 2.2e-227 792.7 674 66.3
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 2.2e-227 792.7 671 65.6
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 4.8e-227 791.6 673 66.1
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.1e-226 790.4 630 67.0
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 4.1e-226 788.5 653 66.0
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 9.0e-226 787.3 674 65.7
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 9.0e-226 787.3 674 65.7
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 9.0e-226 787.3 674 65.7
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.2e-225 786.9 632 68.7
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.5e-225 786.6 701 64.5
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 2.6e-225 785.8 676 67.8
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 5.9e-225 784.6 679 66.1
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 2.2e-224 782.7 679 65.2
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 2.9e-224 782.3 633 67.9
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 8.5e-224 780.8 630 67.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 4.2e-223 778.5 677 65.3
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 4.2e-223 778.5 631 68.1
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 4.2e-223 778.5 673 65.4
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.6e-222 776.5 672 65.2
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.6e-222 776.5 673 66.4
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.1e-222 776.2 711 62.3
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.0e-221 773.9 679 65.5
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 1.4e-221 773.5 676 65.1
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.4e-221 773.5 675 64.9
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.4e-221 773.5 676 64.9
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 2.3e-221 772.7 677 65.0
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 3.0e-221 772.3 676 63.8
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 5.1e-221 771.5 626 66.8
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.5e-220 770.0 659 67.4
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.5e-220 770.0 677 64.0
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 4.3e-220 768.5 674 64.8
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 7.4e-220 767.7 671 64.4
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 7.4e-220 767.7 673 64.8
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 9.7e-220 767.3 634 66.9
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 3.7e-219 765.4 674 65.1
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 6.3e-219 764.6 683 63.7
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.3e-219 764.6 674 64.5
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.8e-218 763.1 647 64.8
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 5.3e-218 761.5 763 59.0
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 2.6e-217 759.2 673 65.2
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 2.6e-217 759.2 678 64.9
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 1.0e-216 757.3 675 63.4
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.3e-216 756.9 631 65.5
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.3e-216 756.9 672 64.4
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 5.0e-216 755.0 621 66.0
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 6.5e-216 754.6 672 63.1
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 6.5e-216 754.6 670 61.8
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-215 753.4 674 64.1
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 9.4e-215 750.7 677 63.2
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 6.1e-214 748.0 605 68.6
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 6.1e-214 748.0 674 64.2
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 7.9e-214 747.7 630 66.2
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 1.1e-212 743.8 675 62.2
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-212 743.8 676 63.2
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.1e-212 743.8 675 63.7
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 4.4e-212 741.9 676 63.3
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 7.4e-212 741.1 676 63.3
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 9.7e-212 740.7 675 63.4
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 3.7e-211 738.8 633 64.1
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 1.2e-209 733.8 677 61.7
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.7e-208 729.9 657 63.3
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 3.8e-208 728.8 712 60.5
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 6.5e-208 728.0 676 62.4
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.1e-207 727.2 628 65.0
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 6.1e-206 721.5 682 62.5
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 6.7e-205 718.0 638 62.4
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 8.8e-205 717.6 581 70.7
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.2e-203 713.0 681 59.3
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.8e-203 712.6 526 71.1
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 4.8e-203 711.8 673 60.2
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.1e-199 700.7 616 62.8
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 2.1e-198 696.4 630 63.5
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.7e-198 696.0 663 62.0
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 4.0e-197 692.2 549 65.6
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 5.7e-196 688.3 649 59.6
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 5.4e-194 681.8 678 58.6
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 2.1e-190 669.8 559 63.9
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.2e-182 644.0 672 57.1
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.7e-179 632.5 614 58.6
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 1.2e-177 627.5 560 65.4
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 1.6e-177 627.1 512 68.2
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.0e-177 626.7 480 68.3
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 3.7e-171 605.9 496 65.7
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 4.9e-171 605.5 552 64.1
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.2e-164 584.3 631 54.4
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 3.7e-155 552.7 617 53.3
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 5.8e-148 528.9 509 59.7
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 1.3e-147 527.7 466 67.0
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 1.7e-147 527.3 622 47.9
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.7e-147 527.3 555 54.6
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.0e-144 518.1 452 62.2
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 1.3e-144 517.7 459 66.9
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.7e-144 517.3 456 67.1
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 8.4e-139 498.4 685 45.5
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 8.7e-136 488.4 679 47.7
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 4.5e-124 449.5 410 60.0
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 3.0e-120 436.8 644 45.7
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 6.3e-118 429.1 329 68.7
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 8.7e-112 408.7 423 54.1
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 1.1e-109 401.7 651 42.4
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.8e-107 393.3 341 68.3
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 4.7e-81 306.6 356 52.5
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 6.5e-75 286.2 326 55.2
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 3.4e-71 273.9 645 34.9
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 5.0e-67 260.0 752 32.7
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.0e-64 252.3 224 61.2
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.4e-64 251.9 195 66.7
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 7.5e-63 246.1 208 60.6
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.3e-62 242.7 183 69.9
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.5e-60 237.3 212 60.4
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.3e-58 230.7 168 69.6
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 3.4e-55 220.7 167 75.4
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.3e-54 218.8 250 53.6
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.8e-49 201.1 158 74.7
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 4.7e-49 200.3 177 61.0
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.6e-47 194.5 129 77.5
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 3.7e-46 190.7 177 58.2
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 6.4e-46 189.9 155 62.6
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 6.4e-46 189.9 155 63.2
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 2.7e-44 184.5 174 56.9
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 3.3e-42 177.6 666 29.6
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.1e-37 160.6 136 69.1
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 9.2e-37 159.5 117 71.8
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 8.9e-32 142.9 148 56.8
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.4e-29 135.6 101 67.3
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 1.2e-28 132.5 92 73.9
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 3.9e-27 127.5 187 42.2
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 8.7e-27 126.3 92 70.7
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 8.7e-27 126.3 92 70.7
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 8.7e-27 126.3 92 70.7
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.3e-26 124.0 92 71.7
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 5.6e-26 123.6 108 60.2
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 7.3e-26 123.2 97 64.9
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 4.8e-25 120.6 94 66.0
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 4.8e-25 120.6 94 67.0
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 3.9e-19 100.9 118 66.1
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 6.9e-16 90.1 86 51.2
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.3e-14 85.9 58 74.1
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 8.4e-14 83.2 94 48.9
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 1.1e-13 82.8 76 64.5
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.4e-13 81.6 132 47.0
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 5.5e-13 80.5 84 48.8
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 9.3e-13 79.7 86 62.8
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 6.7e-11 73.6 67 52.2
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 4.8e-09 67.4 633 22.1
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 4.0e-08 64.3 78 46.2
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 6.9e-08 63.5 49 59.2
MBI11_g46771_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D012379 7.6e-07 60.1 50 60.0
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 2.9e-06 58.2 48 66.7


User provided reference genes

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