Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 4.2e-137 491.5 273 100.0
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 4.2e-137 491.5 273 94.1
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.1e-113 413.7 273 79.1
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 4.2e-113 411.8 273 78.8
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 1.0e-111 407.1 272 78.3
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 7.4e-110 401.0 277 80.9
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.1e-108 397.1 276 76.8
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.4e-108 396.0 272 77.2
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 5.3e-108 394.8 277 76.2
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 4.5e-107 391.7 273 75.8
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 4.5e-107 391.7 274 76.3
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 5.9e-107 391.3 276 76.8
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.7e-106 389.8 272 77.2
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 2.2e-106 389.4 271 75.3
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 3.8e-106 388.7 283 76.3
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 1.1e-105 387.1 272 75.0
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 2.5e-105 386.0 280 76.1
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 3.2e-105 385.6 279 74.9
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 3.2e-105 385.6 251 78.9
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 4.2e-105 385.2 271 75.6
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 2.7e-104 382.5 279 73.5
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 3.6e-104 382.1 276 74.3
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 3.6e-104 382.1 281 73.7
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 4.7e-104 381.7 274 74.8
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 1.0e-103 380.6 283 74.6
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.0e-103 380.6 284 73.6
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 1.0e-103 380.6 271 74.9
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.4e-103 380.2 261 76.6
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.8e-103 379.8 281 72.6
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.8e-103 379.8 281 72.6
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 1.8e-103 379.8 274 74.1
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.0e-103 379.0 281 72.6
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 3.9e-103 378.6 274 73.7
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 5.2e-103 378.3 277 74.4
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 6.7e-103 377.9 272 73.9
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 6.7e-103 377.9 274 74.1
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 8.8e-103 377.5 276 74.3
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.1e-102 377.1 272 75.4
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.1e-102 377.1 280 73.2
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.1e-102 377.1 275 74.5
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 1.1e-102 377.1 275 73.5
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 1.5e-102 376.7 280 72.9
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 2.0e-102 376.3 278 73.0
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 2.6e-102 375.9 278 73.4
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 3.3e-102 375.6 272 73.9
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 4.4e-102 375.2 273 74.4
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 4.4e-102 375.2 283 74.6
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 4.4e-102 375.2 275 75.6
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 5.7e-102 374.8 279 73.1
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 5.7e-102 374.8 278 73.0
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 7.4e-102 374.4 281 71.9
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 7.4e-102 374.4 279 72.8
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.3e-101 373.6 270 75.9
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.7e-101 373.2 278 71.6
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 1.7e-101 373.2 279 74.6
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.7e-101 373.2 274 74.1
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.7e-101 373.2 274 74.1
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 2.2e-101 372.9 278 73.0
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 2.2e-101 372.9 278 73.0
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.2e-101 372.9 276 73.6
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 2.2e-101 372.9 274 73.7
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.8e-101 372.5 276 73.2
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 3.7e-101 372.1 278 75.2
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 3.7e-101 372.1 275 73.8
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 4.8e-101 371.7 284 73.6
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 4.8e-101 371.7 276 74.3
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 6.3e-101 371.3 272 73.2
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 6.3e-101 371.3 276 76.4
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 8.2e-101 370.9 274 74.8
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 8.2e-101 370.9 282 72.7
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 8.2e-101 370.9 282 72.3
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.1e-100 370.5 276 73.6
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.4e-100 370.2 282 72.3
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 3.1e-100 369.0 276 74.3
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.3e-100 368.2 282 72.0
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.2e-99 367.1 273 72.9
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 1.6e-99 366.7 279 74.2
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.6e-99 366.7 276 73.2
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 1.6e-99 366.7 276 72.5
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.6e-99 366.7 270 72.6
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.0e-99 366.3 274 73.4
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.6e-99 365.9 273 71.8
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 5.0e-98 361.7 274 72.3
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 6.5e-98 361.3 273 76.2
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.5e-97 360.1 273 71.1
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.9e-97 359.8 273 70.7
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.9e-97 359.8 277 72.2
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 2.5e-97 359.4 273 70.7
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 2.5e-97 359.4 273 70.7
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 2.5e-97 359.4 273 70.7
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 2.5e-97 359.4 273 70.7
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 2.5e-97 359.4 274 72.3
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 4.2e-97 358.6 277 71.8
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 4.2e-97 358.6 277 71.8
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 4.2e-97 358.6 277 71.8
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 4.2e-97 358.6 277 71.8
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 4.2e-97 358.6 274 71.9
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 4.2e-97 358.6 275 72.0
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 7.2e-97 357.8 228 81.1
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 7.2e-97 357.8 279 71.7
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 9.4e-97 357.5 273 70.7
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.2e-96 357.1 273 70.3
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.6e-96 356.7 271 73.1
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 2.7e-96 355.9 284 72.2
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 3.6e-96 355.5 274 71.5
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 4.7e-96 355.1 251 76.1
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 4.7e-96 355.1 270 71.1
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 6.1e-96 354.8 218 83.0
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 6.1e-96 354.8 278 69.8
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 1.0e-95 354.0 278 72.7
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 4.0e-95 352.1 272 70.2
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 4.0e-95 352.1 276 72.1
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 6.7e-95 351.3 275 68.4
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 2.0e-94 349.7 226 83.2
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 2.6e-94 349.4 270 71.5
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.2e-93 346.3 198 86.9
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 2.2e-90 336.3 194 87.1
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 3.0e-87 325.9 217 76.0
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 6.8e-87 324.7 283 63.3
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.7e-85 320.1 197 80.7
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 3.0e-79 299.3 212 72.2
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.7e-77 292.4 248 69.0
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 6.6e-74 281.6 170 83.5
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 3.6e-72 275.8 191 75.9
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 5.2e-63 245.4 160 80.0
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 5.2e-63 245.4 201 71.6
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 8.3e-61 238.0 135 89.6
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 8.3e-61 238.0 162 71.6
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 7.8e-59 231.5 201 65.7
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 7.3e-57 224.9 165 69.1
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 2.4e-47 193.4 275 48.7
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.1e-41 174.5 122 74.6
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.5e-41 174.1 152 69.7
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.5e-38 164.1 230 49.1
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 3.2e-36 156.4 97 79.4
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 3.5e-35 152.9 182 48.9
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 3.5e-35 152.9 182 48.9
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.5e-22 109.4 82 75.6
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 2.1e-19 100.5 112 53.6
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 7.9e-11 72.0 183 30.1
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 3.0e-10 70.1 144 36.1
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.8e-08 63.5 35 82.9
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.7e-08 63.2 83 45.8
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 1.8e-07 60.8 60 50.0
Pp3c11_21590 Physcomitrium patens HOM05D041339 ORTHO05D031170 1.0e-05 55.1 100 42.0


User provided reference genes

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