Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G1311 Papaver somniferum HOM05D040642 ORTHO05D000614 8.6e-149 530.4 290 100.0
PSO170G3476 Papaver somniferum HOM05D040642 ORTHO05D000614 8.6e-149 530.4 290 100.0
PSO017G6686 Papaver somniferum HOM05D040642 ORTHO05D000614 3.8e-112 408.7 299 79.3
PSO017G6042 Papaver somniferum HOM05D000538 ORTHO05D000614 1.1e-42 177.9 314 42.0
PSO170G5025 Papaver somniferum HOM05D000538 ORTHO05D000614 4.6e-41 172.6 308 40.9
Actinidia12491 Actinidia chinensis HOM05D000538 ORTHO05D000614 3.8e-19 99.8 262 32.1
TAR627G0243 Trochodendron aralioides HOM05D000538 ORTHO05D000614 6.4e-19 99.0 203 35.5
Ciclev10015528m.g Citrus clementina HOM05D000538 ORTHO05D000614 5.4e-18 95.9 235 32.8
PSO210G2224 Papaver somniferum HOM05D000538 ORTHO05D000614 7.1e-18 95.5 234 30.8
Rhsim06G0156300 Rhododendron simsii HOM05D000538 ORTHO05D000614 9.3e-18 95.1 255 29.8
Rhsim13G0162300 Rhododendron simsii HOM05D000538 ORTHO05D000614 1.2e-17 94.7 250 29.2
PSO832G4165 Papaver somniferum HOM05D000538 ORTHO05D000614 2.1e-17 94.0 234 30.8
CDE05G1513 Ceratophyllum demersum HOM05D000538 ORTHO05D000614 3.5e-17 93.2 231 32.0
Sabra11G0087800 Salix brachista HOM05D000538 ORTHO05D000614 3.5e-17 93.2 227 32.6
Dinv22316 Davidia involucrata HOM05D000359 ORTHO05D000251 6.0e-17 92.4 197 32.5
Nn4g26474 Nelumbo nucifera HOM05D000538 ORTHO05D000614 8.7e-16 88.6 233 27.9
Potri.009G088400 Populus trichocarpa HOM05D000538 ORTHO05D000614 8.7e-16 88.6 228 32.9
CsaV3_6G049420 Cucumis sativus L. HOM05D000538 ORTHO05D000614 1.9e-15 87.4 231 32.5
vmacro12238 Vaccinium macrocarpon HOM05D000538 ORTHO05D000614 1.9e-15 87.4 248 33.1
Dinv18544 Davidia involucrata HOM05D000538 ORTHO05D000614 2.5e-15 87.0 244 29.1
Lj8P121T27 Lonicera japonica HOM05D000538 ORTHO05D000614 4.3e-15 86.3 281 29.5
Sed0011252 Sechium edule HOM05D000538 ORTHO05D000614 9.6e-15 85.1 231 30.7
Sc21g0001810 Simmondsia chinensis HOM05D000538 ORTHO05D000614 1.3e-14 84.7 228 32.5
Atru.chr1.3753 Acer truncatum HOM05D000538 ORTHO05D000614 1.6e-14 84.3 233 28.8
MELO3C027126.2 Cucumis melo HOM05D000538 ORTHO05D000614 2.1e-14 84.0 233 31.8
MD05G1335900 Malus domestica HOM05D000538 ORTHO05D000614 2.8e-14 83.6 238 29.8
TWI39G0036 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 3.6e-14 83.2 214 31.3
ClCG02G001630 Citrullus lanatus HOM05D000538 ORTHO05D000614 8.1e-14 82.0 232 29.7
Dinv10905 Davidia involucrata HOM05D000538 ORTHO05D000614 1.4e-13 81.3 237 28.3
Ca_05065_v3 Cicer arietinum L. HOM05D000538 ORTHO05D000614 2.4e-13 80.5 224 29.5
Dinv18944 Davidia involucrata HOM05D000538 ORTHO05D000614 2.4e-13 80.5 266 30.1
MELO3C018793.2 Cucumis melo HOM05D000538 ORTHO05D000614 3.1e-13 80.1 233 29.2
QL08p034081 Quercus lobata HOM05D000538 ORTHO05D000614 3.1e-13 80.1 236 28.4
TAR629G2738 Trochodendron aralioides HOM05D000538 ORTHO05D000614 3.1e-13 80.1 229 30.1
ClCG01G022290 Citrullus lanatus HOM05D000538 ORTHO05D000614 5.3e-13 79.3 231 32.0
Duzib052G0757 Durio zibethinus HOM05D000538 ORTHO05D000614 5.3e-13 79.3 239 29.7
Duzib213G0266 Durio zibethinus HOM05D000538 ORTHO05D000614 6.9e-13 79.0 280 27.9
Manes.17G030100 Manihot esculenta HOM05D000538 ORTHO05D000614 6.9e-13 79.0 315 28.6
CANSAT64G0769 Cannabis sativa HOM05D000538 ORTHO05D000614 1.2e-12 78.2 200 31.5
Ciclev10011975m.g Citrus clementina HOM05D000538 ORTHO05D000614 1.5e-12 77.8 221 29.9
CsaV3_7G003860 Cucumis sativus L. HOM05D000538 ORTHO05D000614 2.6e-12 77.0 219 29.2
Aqoxy1G00857 Aquilegia oxysepala HOM05D000538 ORTHO05D000614 3.4e-12 76.6 282 24.1
Aqoxy4G01596 Aquilegia oxysepala HOM05D000538 ORTHO05D000614 3.4e-12 76.6 235 25.1
Dinv15618 Davidia involucrata HOM05D000538 ORTHO05D000614 3.4e-12 76.6 203 29.1
Manes.16G016900 Manihot esculenta HOM05D000538 ORTHO05D000614 3.4e-12 76.6 328 27.7
HanXRQChr03g0087661 Helianthus annuus HOM05D000538 ORTHO05D000614 4.5e-12 76.3 235 28.9
Lj2g0017985 Lotus japonicus HOM05D000538 ORTHO05D000614 5.8e-12 75.9 221 29.0
Duzib248G0414 Durio zibethinus HOM05D000538 ORTHO05D000614 7.6e-12 75.5 243 29.2
COL.COLO4_13007 Corchorus olitorius HOM05D000538 ORTHO05D000614 9.9e-12 75.1 231 30.3
Sabra16G0183500 Salix brachista HOM05D000538 ORTHO05D000614 9.9e-12 75.1 321 27.7
Rhsim11G0047000 Rhododendron simsii HOM05D000538 ORTHO05D000614 1.7e-11 74.3 192 30.2
MELO3C007351.2 Cucumis melo HOM05D000538 ORTHO05D000614 2.9e-11 73.6 210 31.4
RhsimUnG0059200 Rhododendron simsii HOM05D000538 ORTHO05D000614 2.9e-11 73.6 283 28.6
THA.LOC104805998 Tarenaya hassleriana HOM05D000538 ORTHO05D000614 3.8e-11 73.2 234 24.8
Rhsim11G0032500 Rhododendron simsii HOM05D000538 ORTHO05D000614 6.4e-11 72.4 275 28.7
Actinidia36906 Actinidia chinensis HOM05D004209 ORTHO05D004970 8.4e-11 72.0 173 33.5
MSTRG.9015 Avicennia marina HOM05D000538 ORTHO05D000614 8.4e-11 72.0 216 28.7
Duzib213G0460 Durio zibethinus HOM05D000538 ORTHO05D000614 8.4e-11 72.0 253 26.1
Cpa.g.sc8.251 Carica papaya HOM05D000538 ORTHO05D000614 1.1e-10 71.6 271 27.7
FvH4_3g02930 Fragaria vesca HOM05D000538 ORTHO05D000614 1.1e-10 71.6 229 27.9
Cpa.g.sc1622.1 Carica papaya HOM05D000538 ORTHO05D000614 1.4e-10 71.2 234 28.2
Glyma.13G251000 Glycine max HOM05D000538 ORTHO05D000614 1.4e-10 71.2 246 29.3
ECA248G3523 Erigeron canadensis HOM05D000538 ORTHO05D000614 1.9e-10 70.9 228 32.0
Potri.001G293900 Populus trichocarpa HOM05D000538 ORTHO05D000614 1.9e-10 70.9 320 26.6
Sabra11G0087400 Salix brachista HOM05D000538 ORTHO05D000614 2.4e-10 70.5 333 28.2
TWI38G2394 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 3.2e-10 70.1 229 27.1
FAN21G0633 Fragaria x ananassa HOM05D000538 ORTHO05D000614 4.2e-10 69.7 228 28.1
FAN21G1131 Fragaria x ananassa HOM05D000538 ORTHO05D000614 4.2e-10 69.7 228 28.1
FAN25G1625 Fragaria x ananassa HOM05D000538 ORTHO05D000614 4.2e-10 69.7 231 28.6
Sc24g0000080 Simmondsia chinensis HOM05D000538 ORTHO05D000614 4.2e-10 69.7 221 28.1
THA.LOC104805805 Tarenaya hassleriana HOM05D000538 ORTHO05D000614 4.2e-10 69.7 233 24.0
DCAR_015900 Daucus carota HOM05D000538 ORTHO05D000614 5.4e-10 69.3 251 26.7
Manes.07G017600 Manihot esculenta HOM05D000538 ORTHO05D000614 5.4e-10 69.3 329 27.4
Lj2C275T5 Lonicera japonica HOM05D000538 ORTHO05D000614 7.1e-10 68.9 242 26.0
ECA246G3123 Erigeron canadensis HOM05D000538 ORTHO05D000614 9.3e-10 68.6 101 38.6
Manes.12G076500 Manihot esculenta HOM05D000538 ORTHO05D000614 9.3e-10 68.6 105 39.0
SGA_v2.0_scaffold62G21365 Striga asiatica HOM05D000538 ORTHO05D000614 9.3e-10 68.6 97 39.2
VMungo0540G1345 Vigna mungo HOM05D000538 ORTHO05D000614 9.3e-10 68.6 246 28.9
DCAR_015700 Daucus carota HOM05D000538 ORTHO05D000614 1.2e-09 68.2 212 29.2
Lsat_1_v5_gn_7_18320 Lactuca sativa HOM05D000538 ORTHO05D000614 1.2e-09 68.2 229 25.3
Nitab4.5_0003429g0050 Nicotiana tabacum HOM05D000538 ORTHO05D000614 1.2e-09 68.2 253 29.6
Hma1.2p1_0439F.1_g153220 Hydrangea macrophylla HOM05D000538 ORTHO05D000614 1.6e-09 67.8 302 26.2
Lj6g0024738 Lotus japonicus HOM05D000538 ORTHO05D000614 2.1e-09 67.4 247 28.3
Glyma.05G088300 Glycine max HOM05D000538 ORTHO05D000614 2.7e-09 67.0 215 27.4
Lsat_1_v5_gn_1_81901 Lactuca sativa HOM05D000538 ORTHO05D000614 2.7e-09 67.0 229 25.3
Lj2g0028107 Lotus japonicus HOM05D000538 ORTHO05D000614 2.7e-09 67.0 208 32.2
Nitab4.5_0001134g0160 Nicotiana tabacum HOM05D000538 ORTHO05D000614 2.7e-09 67.0 253 29.6
Sed0014375 Sechium edule HOM05D000538 ORTHO05D000614 2.7e-09 67.0 327 27.2
DCAR_024903 Daucus carota HOM05D000538 ORTHO05D000614 3.5e-09 66.6 104 36.5
Hma1.2p1_0613F.1_g189370 Hydrangea macrophylla HOM05D000538 ORTHO05D000614 4.6e-09 66.2 320 25.9
Migut.H01208 Erythranthe guttata HOM05D000538 ORTHO05D000614 6.0e-09 65.9 220 26.4
MD09G1103400 Malus domestica HOM05D000538 ORTHO05D000614 6.0e-09 65.9 238 25.2
Prupe.3G046700 Prunus persica HOM05D002395 ORTHO05D000614 7.9e-09 65.5 220 30.5
Thecc.07G148000 Theobroma cacao HOM05D000538 ORTHO05D000614 7.9e-09 65.5 312 26.9
Haze_06686 Corylus avellana HOM05D000538 ORTHO05D000614 1.0e-08 65.1 228 25.0
RcHm_v2.0_Chr5g0004541 Rosa chinensis HOM05D000538 ORTHO05D000614 1.0e-08 65.1 251 25.5
Gohir.A01G040800 Gossypium hirsutum HOM05D000538 ORTHO05D000614 1.3e-08 64.7 225 26.2
Lalb_Chr16g0392201 Lupinus albus HOM05D000538 ORTHO05D000614 1.3e-08 64.7 232 28.0
Lalb_Chr20g0122641 Lupinus albus HOM05D000538 ORTHO05D000614 1.3e-08 64.7 238 26.1
VMungo0540G0362 Vigna mungo HOM05D000538 ORTHO05D011169 1.3e-08 64.7 195 31.8
Actinidia26954 Actinidia chinensis HOM05D000538 ORTHO05D000614 1.8e-08 64.3 103 36.9
AT4G01260 Arabidopsis thaliana HOM05D000538 ORTHO05D000614 1.8e-08 64.3 220 28.2
DCAR_031683 Daucus carota HOM05D000538 ORTHO05D000614 1.8e-08 64.3 213 27.7
Prupe.4G029400 Prunus persica HOM05D000538 ORTHO05D000614 1.8e-08 64.3 206 29.6
Sed0002193 Sechium edule HOM05D000538 ORTHO05D000614 1.8e-08 64.3 320 26.2
Nn1g03728 Nelumbo nucifera HOM05D000538 ORTHO05D000614 2.3e-08 63.9 316 25.3
PGR004G2796 Punica granatum HOM05D000538 ORTHO05D000614 2.3e-08 63.9 292 25.7
PGR031G3960 Punica granatum HOM05D000538 ORTHO05D000614 2.3e-08 63.9 218 27.5
Sabra07G0097200 Salix brachista HOM05D000538 ORTHO05D000614 2.3e-08 63.9 95 36.8
Actinidia05541 Actinidia chinensis HOM05D000538 ORTHO05D000614 3.0e-08 63.5 113 36.3
Gorai.002G037800 Gossypium raimondii HOM05D000538 ORTHO05D000614 3.0e-08 63.5 227 26.0
HanXRQChr15g0482761 Helianthus annuus HOM05D000538 ORTHO05D000614 3.0e-08 63.5 232 24.6
RcHm_v2.0_Chr2g0160351 Rosa chinensis HOM05D000538 ORTHO05D000614 3.0e-08 63.5 252 27.0
Nitab4.5_0000786g0080 Nicotiana tabacum HOM05D000538 ORTHO05D000614 5.1e-08 62.8 150 31.3
THA.LOC104822871 Tarenaya hassleriana HOM05D000538 ORTHO05D000614 5.1e-08 62.8 288 25.7
Potri.007G119800 Populus trichocarpa HOM05D000538 ORTHO05D000614 6.7e-08 62.4 95 36.8
Lalb_Chr05g0228411 Lupinus albus HOM05D000538 ORTHO05D000614 8.7e-08 62.0 235 25.5
TPR.G32649 Trifolium pratense HOM05D000538 ORTHO05D000614 8.7e-08 62.0 212 26.9
CARHR050610 Cardamine hirsuta HOM05D000538 ORTHO05D000614 1.5e-07 61.2 239 25.9
COL.COLO4_17402 Corchorus olitorius HOM05D000538 ORTHO05D000614 1.5e-07 61.2 311 26.7
Psat1g211120 Pisum sativum HOM05D000538 ORTHO05D000614 1.5e-07 61.2 224 25.0
CAN.G857.7 Capsicum annuum HOM05D000538 ORTHO05D000614 1.9e-07 60.8 225 27.6
Dinv20713 Davidia involucrata HOM05D000538 ORTHO05D000614 1.9e-07 60.8 203 29.1
Nitab4.5_0008264g0010 Nicotiana tabacum HOM05D000538 ORTHO05D000614 1.9e-07 60.8 170 28.8
Psat1g014720 Pisum sativum HOM05D000538 ORTHO05D000614 1.9e-07 60.8 220 25.9
Ciclev10030003m.g Citrus clementina HOM05D000538 ORTHO05D000614 2.5e-07 60.5 199 27.6
FAN09G4736 Fragaria x ananassa HOM05D000538 ORTHO05D000614 2.5e-07 60.5 246 26.0
Prupe.7G003400 Prunus persica HOM05D000538 ORTHO05D000614 2.5e-07 60.5 187 28.3
Sed0007057 Sechium edule HOM05D000538 ORTHO05D000614 2.5e-07 60.5 323 26.3
SGA_v2.0_scaffold52G19049 Striga asiatica HOM05D000538 ORTHO05D000614 2.5e-07 60.5 124 35.5
CANSAT54G1163 Cannabis sativa HOM05D000538 ORTHO05D000614 3.3e-07 60.1 216 25.0
Migut.M01263 Erythranthe guttata HOM05D000538 ORTHO05D000614 3.3e-07 60.1 103 34.0
MBI18_g24145_MAGBIO Magnolia biondii HOM05D000538 ORTHO05D000614 3.3e-07 60.1 219 26.5
GSVIVG01002745001 Vitis vinifera HOM05D000538 ORTHO05D000614 3.3e-07 60.1 238 23.9
A03p66900 Brassica napus HOM05D000538 ORTHO05D000614 5.6e-07 59.3 188 24.5
BraA01t02790Z Brassica rapa HOM05D000538 ORTHO05D000614 5.6e-07 59.3 188 24.5
Carub.0004s0072 Capsella rubella HOM05D000538 ORTHO05D000614 7.4e-07 58.9 168 27.4
Gorai.013G021200 Gossypium raimondii HOM05D000538 ORTHO05D000614 7.4e-07 58.9 314 25.8
Phvul.004G052300 Phaseolus vulgaris HOM05D000538 ORTHO05D000614 7.4e-07 58.9 260 26.9
AUR62044486 Chenopodium quinoa HOM05D000538 ORTHO05D000614 2.1e-06 57.4 203 25.1
CSS0022087 Camellia sinensis var. sinensis HOM05D000538 ORTHO05D000614 2.8e-06 57.0 333 25.2
FAN05G1770 Fragaria x ananassa HOM05D000538 ORTHO05D000614 2.8e-06 57.0 247 25.1
Gohir.A13G018100 Gossypium hirsutum HOM05D000538 ORTHO05D000614 2.8e-06 57.0 311 24.1
Gohir.D01G028300 Gossypium hirsutum HOM05D000538 ORTHO05D000614 2.8e-06 57.0 204 26.5
Lj6g0011510 Lotus japonicus HOM05D000538 ORTHO05D000614 2.8e-06 57.0 230 25.7
Actinidia24277 Actinidia chinensis HOM05D000538 ORTHO05D000614 3.7e-06 56.6 313 26.5
BolC1t03848H Brassica oleracea HOM05D000538 ORTHO05D000614 3.7e-06 56.6 186 28.0
Carub.0002s0334 Capsella rubella HOM05D000538 ORTHO05D000614 3.7e-06 56.6 236 24.6
Sabra06G0153700 Salix brachista HOM05D020869 ORTHO05D023091 3.7e-06 56.6 172 29.7
AL1G22620 Arabidopsis lyrata HOM05D000538 ORTHO05D000614 6.2e-06 55.8 326 23.3
DCAR_009695 Daucus carota HOM05D000538 ORTHO05D000614 6.2e-06 55.8 231 24.7
TAR509G0002 Trochodendron aralioides HOM05D000538 ORTHO05D000614 6.2e-06 55.8 137 32.8
ATR0796G211 Amborella trichopoda HOM05D000538 ORTHO05D000614 8.1e-06 55.5 109 33.0


User provided reference genes

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