Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 0.0e+00 1100.1 653 100.0
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 1.8e-311 1072.0 654 96.9
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.6e-211 740.0 666 67.1
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 4.9e-208 728.4 665 66.8
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 8.3e-208 727.6 662 65.0
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.8e-207 726.5 663 65.9
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 2.4e-207 726.1 667 66.1
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 5.4e-207 724.9 663 64.6
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.6e-206 723.4 658 66.3
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 3.5e-206 722.2 666 64.6
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 5.9e-206 721.5 661 67.8
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.7e-205 719.9 665 66.9
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 2.3e-205 719.5 662 63.9
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 2.9e-205 719.2 661 66.4
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 3.8e-205 718.8 661 66.6
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 5.0e-205 718.4 667 64.9
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 4.3e-204 715.3 665 65.9
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.2e-203 713.8 668 66.3
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 2.8e-203 712.6 667 66.3
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 6.1e-203 711.4 661 66.3
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 8.0e-203 711.1 668 66.2
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 8.0e-203 711.1 668 65.9
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 1.0e-202 710.7 666 64.1
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 4.4e-201 705.3 660 66.5
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 4.4e-201 705.3 660 61.7
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 7.5e-201 704.5 668 64.4
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 9.8e-201 704.1 664 63.7
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 1.7e-200 703.4 660 64.2
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.2e-200 703.0 659 64.0
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 2.9e-200 702.6 659 64.3
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 4.9e-200 701.8 664 63.6
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.4e-200 701.4 659 63.9
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.4e-199 700.3 660 65.6
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-199 699.9 659 63.9
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 1.9e-199 699.9 662 61.9
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.2e-198 697.2 659 63.6
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 6.0e-198 694.9 663 63.8
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 3.0e-197 692.6 661 65.4
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 5.0e-197 691.8 661 64.0
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 5.0e-197 691.8 663 64.0
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.8e-195 686.0 659 63.6
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 3.6e-195 685.6 668 65.0
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.2e-193 680.6 670 61.9
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 4.4e-193 678.7 669 59.8
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 3.7e-192 675.6 661 59.9
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 1.1e-191 674.1 660 63.3
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.4e-191 673.7 662 65.7
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.4e-191 673.7 662 65.7
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 4.1e-191 672.2 654 62.8
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 4.1e-191 672.2 656 62.2
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 9.2e-191 671.0 636 63.5
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 2.3e-189 666.4 662 62.7
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 8.6e-189 664.5 662 59.2
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 2.1e-187 659.8 655 60.2
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 8.1e-187 657.9 668 64.4
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 2.6e-185 652.9 656 61.1
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 3.4e-185 652.5 654 62.5
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 3.4e-185 652.5 654 62.4
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 9.9e-185 651.0 654 62.5
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.4e-183 647.1 657 64.8
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 5.4e-183 645.2 672 63.2
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.7e-182 642.9 662 62.1
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 3.5e-182 642.5 660 59.8
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 4.6e-182 642.1 658 59.7
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 6.0e-182 641.7 657 58.0
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 2.3e-181 639.8 654 61.8
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.9e-181 639.0 659 58.0
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 6.6e-181 638.3 655 60.0
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 5.6e-180 635.2 664 58.7
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 9.5e-180 634.4 660 57.6
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.6e-179 633.6 657 60.6
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.1e-179 633.3 683 59.6
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 2.8e-179 632.9 658 63.2
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.6e-179 632.5 673 62.3
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.8e-178 628.2 673 62.6
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 8.9e-178 627.9 659 61.0
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.5e-177 627.1 656 57.8
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 2.6e-177 626.3 660 55.9
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 4.4e-177 625.5 655 57.6
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.8e-176 622.5 662 60.1
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 4.9e-176 622.1 658 60.8
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 6.4e-176 621.7 660 61.2
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 3.2e-175 619.4 652 57.4
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 4.2e-175 619.0 659 59.2
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 4.6e-174 615.5 657 59.1
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 4.6e-174 615.5 657 59.1
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 4.6e-174 615.5 660 58.3
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 7.8e-174 614.8 659 59.5
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 1.7e-173 613.6 658 59.6
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 2.3e-173 613.2 664 57.2
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 3.0e-173 612.8 652 58.0
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 2.5e-172 609.8 656 57.5
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 4.3e-172 609.0 659 62.2
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 7.3e-172 608.2 660 56.5
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.6e-171 607.1 668 60.2
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.6e-171 605.9 666 59.5
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 4.7e-171 605.5 665 54.9
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 4.7e-171 605.5 655 53.9
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.1e-170 604.4 656 60.8
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 3.1e-170 602.8 672 56.7
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.2e-169 600.9 658 57.1
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.2e-169 600.9 653 59.1
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-169 600.5 627 60.6
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 2.0e-169 600.1 671 56.5
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 2.6e-169 599.7 671 56.3
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.4e-169 599.4 655 53.6
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.7e-168 597.0 665 55.9
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.9e-168 596.3 655 53.1
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.4e-168 595.1 547 64.7
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.4e-168 595.1 547 64.7
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.4e-167 593.2 663 54.9
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.2e-167 592.8 655 53.1
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 9.3e-167 591.3 538 64.1
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 9.3e-167 591.3 655 55.7
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.5e-166 589.3 674 57.7
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 6.0e-166 588.6 658 56.4
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 5.1e-165 585.5 662 56.5
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 9.6e-164 581.3 677 55.1
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.8e-162 577.0 662 56.6
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 4.0e-162 575.9 660 58.8
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.8e-161 572.0 657 54.0
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 4.9e-160 568.9 664 53.5
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.4e-159 567.4 658 53.0
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 7.1e-159 565.1 656 53.8
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 3.9e-157 559.3 667 56.1
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.1e-157 558.9 654 51.1
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 5.1e-157 558.9 656 52.1
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 7.4e-156 555.1 656 53.0
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.6e-155 553.9 664 55.4
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.0e-153 547.0 648 55.4
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.5e-153 545.8 671 50.7
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.0e-152 544.7 657 54.8
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.3e-152 544.3 669 50.4
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 1.6e-150 537.3 567 58.4
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.7e-150 536.6 659 50.7
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 2.7e-150 536.6 670 49.6
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.6e-147 527.3 672 49.3
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.8e-146 523.9 687 52.8
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.7e-144 517.3 614 54.7
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 6.5e-144 515.4 676 49.7
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.2e-143 512.7 645 56.9
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 2.1e-142 510.4 683 49.6
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 9.7e-140 501.5 656 52.4
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.3e-139 501.1 658 48.8
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.3e-136 491.1 672 50.0
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 4.2e-135 486.1 542 54.8
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 2.5e-132 476.9 665 51.9
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.5e-124 451.1 666 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 4.1e-122 443.0 665 46.0
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 3.8e-120 436.4 672 46.3
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 9.4e-103 378.6 420 56.2
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 1.8e-101 374.4 400 58.2
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 2.0e-97 360.9 655 42.1
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 2.0e-97 360.9 400 55.2
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 7.2e-95 352.4 404 57.2
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.0e-89 334.3 661 41.3
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 3.3e-87 327.0 554 45.1
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 9.8e-76 288.9 540 40.9
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.7e-75 287.0 233 70.4
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 8.9e-69 265.8 313 50.8
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.7e-64 251.5 389 41.9
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 2.5e-63 247.7 633 39.0
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 3.4e-60 237.3 651 36.7
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 9.0e-53 212.6 260 48.5
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.8e-38 163.7 222 56.8
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.4e-28 131.0 109 59.6
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 8.4e-27 126.3 77 83.1
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 3.2e-26 124.4 113 51.3
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.8e-24 118.6 140 55.0
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.1e-21 109.4 88 68.2
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.2e-20 105.9 78 75.6
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.3e-16 91.7 74 64.9
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 3.0e-16 91.3 124 46.0
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 3.9e-16 90.9 132 40.2
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 9.7e-15 86.3 482 25.9
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 7.7e-12 76.6 61 50.8
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 1.0e-11 76.3 46 73.9
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 2.8e-06 58.2 407 25.1


User provided reference genes

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